Sarcophilus harrisii (Tasmanian devil): 100928256
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Entry
100928256 CDS
T02286
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr01524
Platinum drug resistance
shr03430
Mismatch repair
shr05200
Pathways in cancer
shr05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100928256 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100928256 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
100928256 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100928256 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shr03400
]
100928256 (MSH2)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100928256 (MSH2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
YidB
Motif
Other DBs
NCBI-GeneID:
100928256
NCBI-ProteinID:
XP_031806304
UniProt:
G3VBH0
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Position
2:88010940..88078318
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AA seq
934 aa
AA seq
DB search
MAVQPKEALVMDSQAECSFVRFFQSMPAKPLTTVRIFDRGDYYTAHGDDALLAAREVFKT
QAVIKYIGVSGSKKLESVVLSKMNFESFAKDLLLVRQYRVEVYKNKAGSKATKENDWHVA
FKASPGNLSQFEEVLFGSSDMSCSVGGVGVKLSIVDGQRLVGVGYVDSIQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQVIERGGILITERKKTDFSAKDIIQD
LNRLLKSKKGDQVNSAVLPEMENQIAVSSLSAVIKYLELLSDDTNFGQFELTTFDLSQYM
KLDNAAVSALNLFQGSAEDKSGTQSLAALLNKCKTPQGQRLLNQWIKQPLLDKNRIEERL
NLVEAFVVDAELRQTLQEELLRRFPDLNRFAKKFQRHAASLQDCYRIYQAINQLPNVIQA
LEKHEGKHQSLLLAVFVTPLTDLHSDFSKFQEMIETTLDMNQVENHEFLVKASFDPHLTE
LRESITNLEKKMQASLTNAARELGLEPGKHIKLDSNAQLGYYFRVTCKEEKVLRSNKNFN
TLDVQKNGVKFTNSKLAAFNDEYLKIREEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
QLDATVSFAHVSNGAPVPYVRPVILEKGQGKIILKGSRHACVEVQDEVAFIPNDIYFEKN
KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDCQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALADQLPTVNNLHVSALTTDETLTMLYQVKKGVCDQSFGIHVAELANFPKHV
IENAKQKALELEEFQHFGKPQESDDTEPAAKRCYQEKEQGEKIIQAFLNKVKELPFAEMS
EEGIRTKLKRLKAEVIAQNNSFVNEIISRLKVTP
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggaagcgctggtcatggacagccaggctgagtgtagcttcgtc
cgcttcttccagtctatgccggcgaagccgctcaccaccgtgcgcatcttcgacaggggc
gattactacaccgcgcacggcgatgacgcgctgttggccgcccgggaagtgttcaagacc
caggcggtcatcaagtatatcggggtgtctggttcaaaaaaactggaaagtgttgttctt
agtaaaatgaattttgaatcttttgcaaaagacctcctcttggttcgtcagtatagagtt
gaagtttataagaataaagctgggagtaaggccaccaaggagaatgattggcatgtggca
ttcaaggcttcaccaggcaatctttcccagtttgaagaagttctctttggcagcagcgat
atgtcatgttccgttggtggtgtaggtgttaagctgtctattgttgatggccagagatta
gttggggttgggtatgttgactccatacagaggaaactaggactgtgtgagtttccagac
aatgatcaattctccaatctagaagctctgctgattcagattggcccaaaggaatgtgtg
ctacctggaggtgaaactgctggggacatgggaaaactgagacaggttattgagagagga
ggaattctgatcacagagagaaagaaaactgacttttcagcaaaagatatcattcaggac
ctcaatcgtttgttgaaaagcaaaaagggagatcaagtcaatagtgctgtattgcctgag
atggagaatcagattgcagtttcatcattgtcagctgttattaagtatttagaactttta
tcagatgatacaaactttggacaatttgaactgactacttttgatctcagtcaatatatg
aagttggataatgcagctgtcagcgctcttaacctttttcagggctctgctgaagacaaa
agtggtactcagtctcttgctgccttgttgaataaatgcaaaacacctcaaggccaaaga
ctgcttaatcaatggattaagcagccactactcgataagaaccggatagaggaaaggtta
aatctagtggaagcctttgtagtagatgcggagctgagacagactttacaagaagaatta
cttcgacgtttcccagatcttaatcgatttgccaaaaagtttcagagacatgcagccagc
ctacaagattgttaccgaatctatcaagccataaaccagcttcctaatgttatacaagca
ttggaaaaacatgaaggaaaacaccaatcgttgttgttggcagtcttcgtaacacctttg
actgatcttcattctgatttctccaagtttcaggaaatgatagaaacaaccttagatatg
aaccaggtggaaaaccatgaatttcttgtgaaggcatcctttgatcctcacctgacagag
ttaagagagtcaattactaatctagaaaagaagatgcaggcatctttaacaaatgcagca
agagagctaggcttagaacctggtaaacacattaaattggactccaatgcacaactagga
tattatttccgagtaacctgcaaggaagagaaagtccttcgtagcaataaaaactttaac
acattagatgtccagaagaatggtgtcaagtttaccaacagcaaattggctgccttcaat
gatgagtacctcaaaattagagaagaatatgaggaagcccaggatgccattgttaaagaa
attgtcaacatttcttctggctatgtagaaccaatgcagacattgaatgatgtattagct
caactagatgcaactgtcagttttgctcacgtatcaaatggtgcacctgttccatatgta
cgtccagtcattttggaaaagggacaagggaaaatcattttgaagggttccagacatgcc
tgtgttgaagttcaggatgaagttgcatttatccccaatgacatatactttgagaaaaat
aagcagatgttccacattattactggcccaaatatgggaggtaaatcaacatacattcgt
caaactggagtaatagttctgatggctcagattggctgttttgtaccatgtgagtcagca
gaagtgtctattgtggattgtatcttggcccgagttggagcaggtgattgtcagctgaaa
ggtgtatctacattcatggcagaaatgctagagacagcttctattctcaggtctgcaacc
aaagactccctgataatcatcgatgagttgggaagagggacttctacctatgatggattt
gggttagcatgggctatttcggagtatattgccactaagataggtgccttctgtatgttt
gctactcattttcatgaactgacagcattggctgaccagttgccaacagtgaataatcta
catgtttcagcattaactactgatgagacattaactatgttatatcaagtaaagaaaggt
gtctgtgatcagagttttgggattcatgttgcagagcttgctaattttcctaaacatgta
atagagaatgccaaacaaaaggcccttgaactagaagaattccagcattttggaaaacct
caagaatctgatgacacagaaccagcagccaagagatgctaccaagaaaaagagcaaggt
gaaaaaataattcaggcatttctgaacaaggtaaaggaattgccctttgcagaaatgtca
gaggaaggtatcagaaccaaactgaaacgactgaaggctgaagtgatagcccaaaataac
agttttgtgaatgaaataatttcacggttaaaagttactccgtga
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