Sarcophilus harrisii (Tasmanian devil): 100928308
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Entry
100928308 CDS
T02286
Symbol
PRPF8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100928308 (PRPF8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100928308 (PRPF8)
Spliceosome [BR:
shr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100928308 (PRPF8)
Complex C
U5 SnRNP specific factors
100928308 (PRPF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
100928308
NCBI-ProteinID:
XP_023359479
Ensembl:
ENSSHAG00000006167
UniProt:
G3VV91
LinkDB
All DBs
Position
4:complement(438728492..438744612)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGTPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLRTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
GQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQASWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggggtgtttccctacagagggccggggacccccgtgcccggccctctggcaccg
ctgcccgactacatgtcagaggagaagcttcaggaaaaagcccgaaaatggcagcagttg
caggcaaaacgctatgcagagaagcggaaatttggatttgtagacgcgcaaaaggaagac
atgcctccagagcacgtcaggaagatcatccgggaccatggggacatgacgaaccgcaag
ttccgtcatgacaagcgagtctacctgggggccctgaagtacatgccgcatgctgtcctc
aagctcttggaaaacatgcccatgccctgggagcagatccgggatgtgcctgttctgtac
cacatcactggtgcgatttcctttgttaatgagattccttgggtcatcgagcctgtctac
atctctcagtgggggtccatgtggatcatgatgcgtcgagagaagagggacaggcggcac
ttcaagcgtatgcgttttcccccatttgatgatgaggagccgccccttgactatgctgac
aacatcctcgatgtggagcctttggaagccattcagctggaactggaccctgaggaggat
gcccctgtgctagactggttttatgaccaccagcccttaagagacagtaggaagtacgtg
aatggctctacttatcagcgctggcagttcaccctgcccatgatgtccactctgtaccgc
ctggccaatcagctcctaactgatcttgtggatgacaattacttctatctgtttgaccta
aaggcgttttttacctctaaggccctcaacatggctatcccagggggccctaaatttgaa
ccgctggtccgagatatcaatcttcaggatgaagactggaatgaatttaatgatatcaac
aagatcatcatcaggcagcccatcagaaccgaatataagattgcttttccatacttgtac
aacaaccttccacaccacgtccacctcacctggtaccacactcctaatgttgtgttcatc
aaaacagaggaccctgatcttccagccttctactttgatcctttgatcaatcctatctcc
cacagacattctgtcaagagtcaagaacctttgccagatgatgacgaggagtttgagctg
cccgagtttgtggaacctttcctcaaggacacgcccctttacacagataatactgccaat
ggcatcgcccttctgtgggcacctaggcccttcaaccttcgctctggtcgcacccgccgt
gccctggacatacccctggttaaaaactggtatcgggagcattgtcctgctgggcagcct
gtgaaggtgagggtctcctaccaaaagctactcaaatactacgtgctgaatgccctcaag
caccgaccccccaaggcccagaaaaagaggtatctcttccgatcctttaaggccaccaag
ttcttccagtctaccaagctggactgggtggaggtagggctgcaggtctgccgccagggc
tacaatatgctcaacctcctcatccaccggaagaatctcaactacttgcatctggactat
aacttcaacctaaagcctgtcaagactctcaccaccaaggaaagaaagaagtctcgcttt
ggaaatgccttccacttgtgtcgggaggtgctgcggctgaccaagctcgtagtggacagc
cacgttcagtaccgcttgggcaacgtggatgccttccagctagcggacgggctgcagtat
atatttgcccacgtgggacagctgacaggaatgtaccgctacaagtacaagttgatgcgg
cagatccgcatgtgcaaggacctgaagcaccttatctactaccgcttcaacacgggtccc
gtggggaagggcccaggctgtggtttctgggctgctggttggcgagtctggttgtttttc
atgcgtggcatcacccctcttttggaacggtggctgggcaacctcctggcccggcagttt
gaaggtcgtcactcaaagggggtggcaaagaccgtgaccaagcagcgagtggagtcccac
tttgacttggagctccgggcagcggtgatgcatgatatcttggatatgatgcctgagggc
atcaaacagaacaaggcccggacgatcctgcagcacctcagtgaggcctggcgctgctgg
aaggccaacatcccctggaaggttcctgggttgccgacccccattgagaacatgatcctg
cgctacgtgaaggcgaaggcggattggtggaccaacaccgcccattacaaccgagagcgg
atccgccggggagccaccgtcgacaagaccgtttgtaagaagaacttgggtcggctcaca
cggctctatctgaaggctgaacaggaacgacagcacaactacctaaaggatggtccctac
atcacagcagaagaggcagtggctgtctacaccaccactgtgcactggctggagagccgc
agattctcccccatccctttccccccactctcctacaagcatgacaccaagctactcatc
ctggccctggagaggctcaaggaggcctacagtgtgaagtcccgtttgaaccaatcccaa
agagaggagctgggcctgattgagcaagcctatgacaacccgcacgaggctctgtctcgt
atcaagcgtcacttactcacgcagagagccttcaaggaggtgggcattgagttcatggac
ctgtacagtcacctggttcctgtgtacgacgtagaacccctcgagaagatcacagacgcc
tacttggaccagtacctgtggtatgaagctgacaagcgccggctcttcccaccctggatc
aaacctgctgacacggagccgcctcccctgctggtgtataaatggtgccaaggcatcaat
aacctgcaggacgtgtgggagacgagtgagggagagtgcaacgtcatgctggagtcgcgc
tttgagaagatgtacgagaagatcgacttgacgctcctgaacaggctcctgcgcctcatt
gtggaccacaacattgctgactatatgacggccaagaacaacgtggtcatcaactacaag
gacatgaaccatacgaattcatatgggatcattcgaggacttcagttcgcctccttcatc
gtgcagtactacgggctggtgatggaccttctggtattgggcctacaccgggccagcgag
atggctgggcctccccaaatgcccaatgacttccttagcttccaagacatcgccacagaa
gctgcccaccccatccgccttttctgtagatacatcgaccgcatccacattttcttcagg
ttcactgccgacgaggcccgggacttgatccagcgctacctcacggaacaccctgacccc
aacaacgagaacatcgtgggctacaacaacaagaagtgctggccccgcgacgcgcggatg
cgcctcatgaagcatgacgtcaacttgggccgcgctgtgttctgggacatcaaaaaccga
ctgccgcgatcggtaacaacggtgcagtgggagaacagctttgtgtcagtgtacagcaag
gacaaccccaatctgctcttcaacatgtgcggcttcgagtgccgcatcctgcccaaatgc
cgcaccagctatgaggagttcacccacaaggatggtgtttggaacctccagaatgaggtc
acaaaggagcggacagctcagtgcttcctgcgtgtggatgatgagtctatgcagcgcttc
cacaaccgtgtgcgtcagatcctgatggcctctggctcgaccaccttcaccaagattgtg
aacaagtggaacacggctctcattgggctcatgacgtacttccgtgaggctgtggtgaac
acccaggagctgctggaccttctggtgaaatgtgagaacaagatccagacccgaatcaag
atcgggctcaactccaagatgccaagccgcttccctccagtcgtgttctacacccccaaa
gagctcggggggctgggcatgttgtccatgggccacgtgctcatcccccagtctgatctc
aggtggtccaagcagacagatgtgggcatcacccacttccgctccgggatgagccacgaa
gaagaccagctcattcctaacttgtaccgttacatccagccttgggagagcgagttcatt
gactctcaacgggtctgggccgagtatgcgctcaagaggcaggaagccatcgctcagaac
aggcggctgaccttggaggacctggaggattcatgggatcgaggcattccccggatcaat
accctgttccaaaaggaccggcacacactggcttatgacaagggctggcgtgtccgcact
gacttcaagcaataccaggtcctgaaacagaatcctttctggtggacccaccagcggcat
gatgggaagctctggaacctgaacaattaccgcacagacatgatccaggccctgggtggt
gtggagggcatcctggaacacaccctcttcaagggcacttacttccctacctgggagggt
ctcttctgggagaaggccagtggttttgaggagtcgatgaaatggaagaagctgaccaat
gcccagcggtccggcttgaaccagatccccaaccgtcgcttcacactgtggtggtcgcca
accattaaccgcgccaatgtgtatgtaggtttccaggtccagctggaccttactggcatc
ttcatgcacggcaagatccccaccctgaagatctctctcatccagattttccgtgcccat
ttatggcagaagatccatgagagtattgtcatggacttgtgtcaggtgtttgaccaagaa
ttggatgcgctggaaattgagacggtgcagaaggagacaattcacccccggaagtcctat
aagatgaactcatcttgtgcagacattctgctttttgcctcctacaaatggaacgtctcc
cggccgtctctgctggctgactccaaggacgtgatggacagcaccaccactcagaagtac
tggatcgacatccagctgcgctggggcgactatgactcccacgatatcgaacgctacgct
cgggccaagtttctggattacactaccgacaacatgagtatctacccctctccaacgggg
gtgctcattgccatagacctggcatacaatctgcacagcgcctatggaaactggtttcca
ggcagcaagccgctgatccagcaagccatggccaagatcatgaaggcaaaccctgccttg
tacgtgctccgagagcgaatacgcaaggggttgcagctgtactcctccgagcccacagag
ccttacctctcctcccagaactatggcgagctcttctccaaccagatcatctggtttgta
gatgacaccaatgtctacagagtcaccattcacaagacttttgaagggaacttgactacc
aagcccatcaatggggccatcttcatcttcaatccaaggacggggcagctcttcctgaag
atcatccacacgtctgtgtgggctggacagaagcgtctgggtcagttggccaagtggaag
acagccgaggaagtggctgccctgatccgttctctccctgtagaagagcagcccaaacag
attattgtgaccagaaaaggcatgttggaccccttggaggtgcacttactggacttcccc
aacattgtgatcaaaggctcggagctgcagctgcccttccaggcctgtctcaaagtggaa
aaattcggggaccttatcctcaaggccaccgagccccaaatggttctcttcaatctctat
gacgactggctcagaaccatctcatcctacacggccttttcccgtctgatcctgattctc
cgtgcccttcatgtgaacaatgaccgggccaaagtgatcttgaagccagacaagaccacc
atcacagagccgcaccacatttggcccacgctgaccgacgaggagtggatcaaggttgag
gtgcagctcaaggacttgatcctggctgattacggcaaaaagaacaacgtcaacgtggcc
tcactgacacaatctgagatccgggacatcattctgggcatggaaatctccgccccttca
cagcagcggcagcagattgctgagattgagaagcagaccaaggagcagtcccagctgacg
gcaacacagacccggactgtcaacaagcacggtgatgagatcatcacttccaccaccagc
aactacgagacacaaactttttcctcgaagaccgagtggagggtcagggccatctctgca
gccaacctgcatctgcggaccaaccacatctacgtgtcatctgatgacatcaaagagaca
ggctacacttacatccttcccaagaatgtcctcaagaaattcatctgcatttctgatctt
cgggcccagattgcaggctacctctatggagtgagccccccggacaaccctcaggtgaag
gagatccgctgcatcgtgatggtgcctcagtggggcacccaccagacggtgcacctgccg
ggccagcttccccaacacgagtacctcaaggagatggagcccctcggctggatccacaca
cagcccaacgagtccccccagctctcgccccaggatgtcaccacccatgccaaggtcatg
gccgacaacccctcatgggacggggagaagacaatcatcatcacctgcagctttaccccg
ggctcttgcaccctgacggcctacaagctgacgcccagtggttacgagtggggtcggcag
aacacagacaagggcaacaaccccaaaggctacttgccttcccactatgagcgtgtccag
atgctgctctctgaccgcttccttggcttcttcatggtccccgctcaggcgtcctggaac
tacaatttcatgggtgttcggcacgaccccaacatgaaatacgagctgcagctggccaac
cccaaagagttctatcacgaggtgcaccggccctcccacttcctgaacttcgcgctgctg
caggagggggaggtgtactcggccgaccgagaggacctgtacgcctag
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integrated database retrieval system
