Sarcophilus harrisii (Tasmanian devil): 100928826
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Entry
100928826 CDS
T02286
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03030
DNA replication
shr03420
Nucleotide excision repair
shr03430
Mismatch repair
shr03440
Homologous recombination
shr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100928826 (RPA1)
03420 Nucleotide excision repair
100928826 (RPA1)
03430 Mismatch repair
100928826 (RPA1)
03440 Homologous recombination
100928826 (RPA1)
03460 Fanconi anemia pathway
100928826 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shr03000
]
100928826 (RPA1)
03032 DNA replication proteins [BR:
shr03032
]
100928826 (RPA1)
03400 DNA repair and recombination proteins [BR:
shr03400
]
100928826 (RPA1)
Transcription factors [BR:
shr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100928826 (RPA1)
DNA replication proteins [BR:
shr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100928826 (RPA1)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100928826 (RPA1)
MMR (mismatch excision repair)
100928826 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
100928826 (RPA1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
100928826
NCBI-ProteinID:
XP_031823656
Ensembl:
ENSSHAG00000007969
UniProt:
A0A7N4PS46
LinkDB
All DBs
Position
4:438883979..438939972
Genome browser
AA seq
620 aa
AA seq
DB search
MSGRLSEGAIGLIMQQGDTSIKPILQVINIRPIATGNSPPRYRMLMSDGLNTVSSFMLAT
QLNVLVEEERLSSNCICQVNRYIVNTLKFGRKVVILMDLEVLQSADEVGGKIGNPVPYNE
GQGQQQAAPAPAPGPAANPVATKPQQQNGSSGLGSTATKSYGVSKTFGKVGSTNLSTPGG
SQLKVVPIASLNPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIEMVDESGEIRATAFN
DQVDKFFPLIDVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVVLCEDAHHLPTVQ
FDFTVIGDLENKAKDSLVDIIGVCKSYEDASKVVVKSSNREVSKRNIHLMDTSGKVVTTT
LWGEEADRFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTMLVNPDIPEAFKLRGWFDSEG
QALEAVSISDARGGGTGGSNANWKTLYDVKSENLGQGDKADYFSCVATVVYLRKENCMYQ
ACPSQDCNKKVIDQQNGLYRCEKCDREFPSFKYRMILSVNIADFQENQWVTCFQESAEAI
LGQNTAYLGELKDKNEQAFEEVFQNANFRSYTFKIRVKLETYNDESRIKASVVDVKPVDY
REYGKRLIMNIRKNAAARQM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcgcctgagcgagggcgccattgggctgataatgcaacaaggagatacttct
ataaaacccatactccaagtcattaacatccggccgattgctacaggaaattctccaccc
cgttatcgaatgctcatgagtgatggattgaatactgtatcctctttcatgttggcaaca
cagctgaatgtactggtggaggaagagcgtttgtcaagcaactgcatttgccaggttaac
cggtacattgttaataccctgaaatttggaaggaaggtggttatattgatggatttagaa
gttttgcagtctgctgatgaagttggaggaaagattggcaatccagtgccctataatgaa
ggacaagggcagcagcaagcagccccagccccagccccagggccagccgctaatccagta
gctaccaagccccaacaacagaatgggagttcaggactgggttctacggccactaagagc
tatggtgtttcaaagacatttggtaaagttggaagcactaatctaagcacccccggagga
tcccagttgaaagttgttcccattgccagcctcaatccgtaccagtccaagtggactatt
tgtgctcgtgttactaataaaagtcagatccgaacctggagcaactcccgaggggaagga
aagcttttttctattgaaatggttgatgaaagtggtgagatcagagctactgctttcaat
gatcaagtagacaagttctttcccctcatcgatgtgaataaggtgtattacttctccaaa
ggcaccctgaagattgctaataagcagttcacagctgttaagaacgactatgaaatgacc
ttcaataatgagacctctgttgtgctttgtgaggatgcccatcacttacctacagttcag
tttgacttcacagtgattggtgacctagagaataaggctaaagactcacttgtagacata
attggggtctgtaaaagctatgaagatgccagcaaggtggttgtgaagtcatccaacaga
gaagtttccaagaggaacatccacctgatggacacgtcagggaaggtggtgacaactact
ctgtggggcgaagaggctgacagattcgatggttcgcgacagcccgtgctggccatcaag
ggagcccgggtctctgactttggtggacggagcctctctgtgttgtcttcaagcaccatg
cttgtgaatcctgacattccagaggcttttaagctacgtggatggtttgactcagaagga
caggccttagaagctgtttcgatctctgatgccagaggtggaggaactggagggagtaat
gccaattggaaaactttgtatgacgttaaatctgagaatctggggcaaggtgacaaggcg
gattactttagttgtgtggcaacagtggtgtaccttcggaaggagaattgtatgtaccag
gcttgtccctctcaagattgcaataagaaagtgatagaccagcaaaatggactctatcga
tgtgagaaatgtgatcgtgaatttcccagcttcaagtaccggatgatcctgtcggtcaat
attgcggatttccaggagaatcagtgggtgacttgtttccaggaatctgcagaagctatc
cttgggcagaacactgcgtatcttggggaattaaaagacaagaacgagcaggcctttgag
gaagtcttccagaacgccaactttcgttcctatacattcaagattagagtcaaactggag
acttacaatgatgaatctcgcattaaggcctctgtcgtggacgtgaaacctgtggactat
agagaatatggcaagaggctcatcatgaacatcaggaagaacgcagcggctcggcaaatg
tga
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