Sarcophilus harrisii (Tasmanian devil): 100928875
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Entry
100928875 CDS
T02286
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04382
Cornified envelope formation
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100928875 (COL7A1)
09158 Development and regeneration
04382 Cornified envelope formation
100928875 (COL7A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Pur_ac_phosph_N
Kunitz_BPTI
Fn3_VIN3
FN3_DSCAM-DSCAML_C
Interfer-bind
Arylsulfotran_N
Motif
Other DBs
NCBI-GeneID:
100928875
NCBI-ProteinID:
XP_031815612
Ensembl:
ENSSHAG00000011181
LinkDB
All DBs
Position
1:86402510..86453267
Genome browser
AA seq
2929 aa
AA seq
DB search
MDSSRMRLWFLLTVEAIGILLVPVQGQGERGRVTCTNLYAADIVFLLDGSSSIGRNNFRE
VRAFMEGLVLPFTEVVGPSGVRFSVVQYSDDPRTEFGLDTYGSGNEVIQAVRELTYKGGN
TRTGAGFRHIADYIFLPRLARPGVPKVCILITDGKSQDQVESAAQRLKGQGVKVFAVGIK
NADQGELRRTASEPPDVFFYFVNDFNILSTLLPLVSRRVCTTTGGTPQILPPEGLPSGPR
DLVLSQASSNSLLAEWTAASGPVISYKVQYVPLTGLGQPVPDQRQEVTVPAGETRVRLQG
LRPQTEYQVTVVAQYANSVGEAVSRTAQTFALEGPMISIQNATAHTLLVAWRPVAGATGY
RVTWRNLESGSSQQLDVGRGQSSALLKGLSPDSEYVVTVTPLHGRTPGPSASLTARTERD
IIQNLQTVILGPTSIHVFWTHIPEAQGYRLEWRPVSGLEPTQTVLLSTDVTSYQLQGLQP
GTEYRLTLYTLYEGREVATPATISQTVLEPTPGRVTDLRVAETYPSRRLVRVVWSPVPGA
SGYRFVVRNTQDGSEKIQKLPPEPTSFDLDRVQPGVSYVVRVSALAGSREGPPGVLTVRL
DPESLPRVPRLRVVASEPGRVQVSWGPVPGASGYRLSWRLRDGQESSRILPSDTTSFDIG
GLRPGATYQVSVSALRGADQGPPSIITIITDSPGSVAGLRVTYTGSSSARITWTGVPGAT
SYRISWHSGRGPEQSQLIPGEASTATLDGLEPNTDYTVRVTALVGSLEGAPASVAVRTAP
EPVGAVSKLQILDSSSDVVRVTWVGVPGATSYRLVWGRRDGGPESSRMLPGDTESAEIGG
LEGGVSYTVRVTALIGNREGAPVSLTVTTPSVAPVAPGSLRLLQSEQRALRLAWDPVRGA
GGFRLRWRPEGGSEQSRLLGPDVSRYDLVGLEPGTLYYVSLSTLGPSGSGESPPVTLTAR
TGPPSLLTTDLRVVETSLDSVTLAWTPVPGISSYVLSWRPAPGSGHTSPGSQQTLAGSLS
SQRVSGLEPGVSYTFSLTPIQGSSRGPEVSLTQHPECPRGQADVVFLIHATRDNEHQSGV
VKAALGRLVSALGPLGPDAVQVGLMTYSHRPSPLVPLNGSYDRNSILQRIQGIPYTDPSG
NNLGAAISTAHRYLLAPNSSGRRSHVPGLLVLVVDGPSGDDVISPAREAQAAGISVLALG
LPGAQPEQLRRLVSSGDPAPVFIAADNTRGLEQALGGLAPALCQLASGTQLRPVPCPSQC
PRGPKGEPGEAGQKGQIGPPGDPGRSGPPGPRGLPGSGEKGERGFPGVDGQPGRPGNPGS
PGLAGSPGRPGSRGEAGEPGLPGQKGEPGKPGSIVGGGAGQPGRKGEPGVQGPPGPRGSD
GNPGLPGPRGPSIKGDKGDRGEPGLPGAGGGGVGGGDPGLPGLPGNPGPAGPPGPQGEKG
DKGEGEDGFPGLPGRPGNPGDRGPRGPPGETGSKGDPGQPGSSGNPGEKGDRGLPGLPGL
QGEPGLSGRPGAEGQEGPPGPAGRRGEKGEPGEPGKPGVITGFDGTGVKGEKGNPGPEGP
RGGPGPKGDRGPSGIGVPGDPGPKGEPGDRGAIGLTGRAGPKGDLGASGEKGEPGRAGPP
GPTGPRGRDGEPGEKGEEGAVGDTGLPGKPGDRGLRGLPGLRGTPGEKGDQGDPGEDGRN
GSPGPVGLKGDRGEPGPPGPPGRLVDPGTVPGVGEKGIKGEPGDPGEDGPRGPKGDAGPP
GAPGERGPEGLRGAPGSRGDPGDRGPAGEKGERGAPGSEGRNGLDGKPGAIGPPGLRGDT
GKSGEPGRDGLPGLRGEQGPPGPPGLPGVTGKPGDDGKPGLNGRNGEPGDPGEDGRKGDK
GEAGAPGRDGRDGSKGDRGDVGSPGLQGPPGLPGPVGPPGQGFPGVAGAPGPKGDRGEAG
ARGEQGLPGERGLKGDSGSVTNIEQSLESLGLRVSALRQIVKESSEGFLRPPDQFRGYKG
EPGERGPAGKEGPVGLTGERGPKGDRGDMGPPGPPGQGLIERGVPGPPGQPGEPGKPGIP
GLPGRAGELGEVGRPGERGERGEKGERGEPGRDGLQGPPGLPGPKIDVDGIVPGGPGVPG
IRGPKGEPGRDGDRGSKGDKGENGVKGDRGEAGEKGRDGSPGPSGERGPSGPEGKPGLPG
ARGAPGPAGNHGDPGPHGAPGLAGPPGPQGPSGLKGEPGEPGPPGRGLPGPQGVVGLPGP
PGSSGLVGPQGPPGLPGQVGETGKPGVTGRDGKDGERGAPGVPGPPGLPGPVGPKGEPGA
TGLPGQAVVGPPGMKGEKGAPGGLAGDLVGEPGSKGDRGLPGPRGEKGEAGRPGEPGDPG
EDGRKGATGLRGEKGSMGIGVQGPPGSDGPPGPKGDSGFPGPPGPPGTPGVVGFPGQAGP
RGESGQPGLSGERGVTGPPGKEGVPGPPGLPGPAGAVGPLGAPGPKGDKGDPGVGQPGAR
GERGDPGVRGENGRPGLEGDRGPAGPPGSRGERGDKGDAGGPGLKGDKGDTAVIEGPPGP
RGPKGETGDRGLRGLDGDKGARGDNGLPGEKGVKGELGDRGSPGSQGARGPVGQKGDSGD
PGMPGVPGLSGKGGAPGAHGEKGEPGFMGPRGLKGDRGLKGACGQDGEKGDKGEAGIHGR
PGLPGRKGEMGEMGLPGLSGHPGKEGLIGPKGDRGFDGQQGPKGDQGEKGERGLPGVGGI
QGPRGSDGASGPPGPPGSIGPKGPEGIQGQKGERGPPGESVVGARGVPGIPGERGEQGSV
GPMGPRGEKGEPSMTASDIRSFIRQEMSQHCACGGQYIASGSRPLPSYSADTPGPDPWPH
PIPVLRLSHAEEEGPGPPEDDEYSMEDYEDMEGDATEEPWAAGHGLCSLPLDEGSCSNYT
LRWYHRPGRGCHPFVFGGCEGNANRFSSREDCERQCLPHGGPGSAPPLS
NT seq
8790 nt
NT seq
+upstream
nt +downstream
nt
atggacagctccaggatgaggctctggttcctgctcactgtggaggccataggaatcctg
ttggtaccagtgcaaggacagggggagagaggtcgagtgacctgcaccaacctctatgct
gccgacatcgtcttcctgctggacggatcctcctccattggccgaaacaactttcgagaa
gtccgggccttcatggaggggctggtgcttcccttcaccgaggtcgtggggccttctggt
gtccgcttcagtgtggtgcaatacagtgatgacccacggactgagttcggcttggatacc
tatggttctggtaatgaagtgatccaagcagttcgagagctcacctacaagggaggaaac
actcgcacaggggctggattccggcacatcgcagactatatctttctgcctcggcttgct
cgacctggtgtccccaaggtctgcatcctcatcactgatgggaagtctcaggaccaggtg
gaatcggcagctcagaggctgaaggggcagggggtgaaggtgtttgctgtggggatcaag
aatgctgatcagggagaactccggaggacagcttcagagcccccagatgtcttcttttac
tttgtcaacgactttaatatcctcagcaccctgttgcccctcgtgtcccgccgcgtctgc
accaccacgggcggcaccccccagatcctgcccccagaaggcctcccctcgggtccccga
gatctggtgctgtcacaggccagcagcaattccctcttggctgagtggacagcagccagt
ggtcctgtgatcagctataaagtccagtatgtccctctcaccgggctgggacagcctgtg
cctgaccagcggcaggaggtgactgtaccagccggggagacgagggtccggctgcaaggt
ctgcggccacagactgaataccaggtgacagtggtcgcccagtacgccaatagcgttggc
gaggccgtgagcaggactgcccagacctttgcactggaggggcccatgatctccatccag
aatgccacggcccacactctcttggtggcctggcggcctgtggctggagccactggttat
cgagtgacctggagaaatttagagagtgggtcctctcagcagctggacgttggccgaggc
cagtcgtctgcccttctaaagggcctgagtccagactcggaatacgtggtgactgtgacc
cctctccacggccggacaccagggccttctgcgtcactgacagcccgcacagagcgggac
atcattcagaatttacagacggtcatcttgggcccgacatccatccatgtcttctggacg
cacatccctgaagcccagggctacagactggagtggagaccagtgagcggcttggagcca
acgcagacagtgctgctgtccacggatgtgaccagttaccagcttcaggggctgcaacct
ggcaccgagtatcgactcacactctataccctttatgaggggcgtgaagtggctacccct
gccaccatctcccaaaccgtgctggagccgaccccgggccgagtgactgatttacgagta
gctgagacgtatccatccaggcggctagttagggtggtctggagccctgtgcccggtgcc
tctggctaccgttttgtggttcgaaacacgcaagatggctctgagaagatacagaagctt
cctcccgagccgacaagctttgatctggacagagtccagcctggtgtgagctatgtagtg
cgtgtatcagccctggcaggcagccgagaaggccctcctggcgtccttactgttcggctt
gaccccgagtccttgcccagagtccccagacttcgagtggtagcatcagaaccgggccgg
gtccaggtgtcctggggcccagtgcctggagccagtggttaccggctaagctggcggctg
agagacggccaggaatcctccaggattctgccatcagacaccacatcctttgacattggg
gggctgcggccaggggccacataccaagtctcagtgtctgctctacggggtgctgaccag
ggtcccccctcaatcatcaccatcatcacagactctccaggatccgtggctggtcttcga
gtgacttatactgggagctcctctgccagaatcacctggacgggggtcccaggagccaca
agctataggatctcttggcactcaggcagagggccggaacaatcccagctaatccctggg
gaagcttcaacagccacactggatgggctggaaccaaacacagactacacagtgagagta
acagccctggtgggcagcttggagggggccccagcttctgtggcggtgaggactgccccg
gagcccgtcggggcggtgtccaagctccagatcctagactcatccagcgacgttgtgcga
gtcacctgggtgggagtgcccggcgccacgtcctaccggctggtgtggggaagaagggac
ggcggccccgagagtagccggatgctcccaggagacacggagtctgccgagattgggggc
ctggaggggggcgtcagttacaccgtgcgggtgactgcgctgatagggaaccgcgagggg
gcgcccgtgagcctcacagtgaccacaccgtccgtggctcccgttgcccccggctccctt
aggctcctgcagagtgagcagcgagcgctgcgcctggcttgggaccctgtgcgcggggcc
ggcgggttccggctccgctggcggcccgaaggaggctcagagcagtcccggctcctgggt
ccggatgtcagccgctatgacctggtggggctggagcccggcacgctgtactatgtgagc
ttgagcaccttgggtccttcgggatcaggcgagagcccgcccgtgaccctgactgcccgc
actggacctccctccctgcttaccactgaccttcgtgttgtggagacttcactggattcg
gtgacactggcctggacaccggtgccagggatatccagctacgtcctgtcgtggagacca
gcaccaggctctggccacacttcccctgggtctcaacagacacttgcaggttccttgagt
tcccagagagtgtcagggctggagcctggcgtctcctacaccttttccttaacacctatc
caagggagtagccgaggtcccgaagtttcactcactcagcatcctgagtgcccccgcggc
caggcagatgtggtgttcctgatccatgccactagggacaacgagcaccaatcaggtgtg
gtgaaggctgccctcggccgcctggtgtctgccctgggaccacttgggccagatgctgtg
caggttgggcttatgacctacagtcaccgaccctcccccctggtccccctgaatggctcc
tatgatcgaaactccatccttcagcggatccagggcattccctacacagatccaagtggg
aacaaccttggtgctgccatcagcacggcacacaggtacctgctggctcctaacagcagt
ggccgtcgctcccatgtgccaggcttgctggtgctggtggtggacggtccttcaggagac
gatgtcatcagtcctgctcgggaggcgcaggctgcagggatttctgtgctggcgctgggt
ctgcctggggctcagccggagcagctgaggcggctggtgtccagtggggatcctgcgccg
gtctttatcgctgcggacaatacccgtggcctggagcaggcacttggtggcctggcccct
gctctgtgccagctggcctctggcacccagctgaggcccgtgccctgcccatcccagtgt
cccaggggtccaaaaggggaacctggagaggctggccagaaaggacaaattggcccccct
ggagacccgggcaggagcggcccccctggaccccgggggttacccggaagtggcgagaag
ggggagagggggttccctggagtggatggacagccaggccgccctggcaaccctggaagt
cctggcctggcaggctctcctggccggcctggctctcgaggggaagcgggggaaccaggc
ctgcccggacagaagggggagccgggaaagcctggctctattgtaggaggaggagcaggg
cagcccggcaggaagggggagccaggtgtccagggacctccaggcccccgtggctcagat
gggaatcccggcctgccagggccccgaggaccatcgatcaagggtgacaaaggtgacaga
ggagagccgggtcttcctggagcaggcggtggaggtgttggaggaggtgatcctgggctg
ccgggcctcccaggaaatccaggtcctgcaggcccccctggcccccagggggagaaagga
gacaagggagaaggcgaagatggatttccagggctcccaggtcgaccaggaaacccagga
gaccgaggtcctcgaggaccaccaggagaaactggaagcaaaggagacccaggccagcca
gggtcttcagggaacccgggagagaagggtgatcgaggcctcccaggactgccagggctg
cagggggaacctggcttgtcagggagacccggggctgagggccaagagggacctccagga
cccgctggtcgaagaggagagaagggagaacctggagaacctggcaaacctggcgtgatc
acgggctttgatggtactggagtgaaaggagagaaggggaatccgggcccggagggaccc
aggggaggcccaggacccaaaggggaccggggtccatcgggaattggtgttcccggggat
cccggccccaaaggggagcccggagaccgaggtgccataggtctcacgggcagagccggg
cccaagggtgacctgggggcttcgggagagaaaggggagcctggacgagctgggccgccg
ggacccaccggccctcgagggagagacggggaacctggagagaagggagaggagggcgct
gtgggtgacacaggcctgccgggaaagcctggagaccggggccttcgggggctcccaggc
cttcggggcacgccgggggagaagggcgaccaaggcgaccctggagaggatgggcggaat
ggcagtccgggaccagtgggtctcaaaggtgaccgtggggagccggggcccccaggaccc
cctgggagattggtggatccagggactgttccaggggtcggagagaaaggaatcaagggg
gagcctggtgaccccggagaggatgggcctcggggccccaagggagatgccggaccccca
ggagctcctggggagagggggcctgaaggtctgcggggtgcccctggatctcggggagat
ccaggtgaccggggccctgctggcgagaagggtgagcgcggagcccctgggtctgagggc
cggaacggactggatgggaagccgggcgccataggcccccctggcctgaggggtgacacc
ggcaaaagtggggagcccgggagagatggactccctggcctgagaggggaacagggcccc
cctggacctcctggtcttcctggagtgactgggaagcctggagatgatgggaagcccggg
ctgaacggaaggaatggagagcctggggaccccggagaggacgggaggaagggcgacaaa
ggtgaagctggagcccctggaagagatggccgggacggttccaaaggcgatcgtggggac
gtaggaagcccaggcctgcagggcccccctggactccctggcccagtcggcccccccggc
cagggtttcccaggcgtggccggggctccagggcccaagggtgaccgaggagaagcagga
gccaggggtgaacagggtctccctggagagcgtggcttgaaaggggattcgggctctgtg
acaaacatagagcaatccctggaatcccttggactgagggtgtctgcacttcgacaaatt
gtcaaagagagctcagaaggcttcttgaggcctccggaccaattccgaggctacaagggg
gagcctggagagcgggggccggcgggcaaggaggggcctgttggcttgactggagagcga
ggcccgaagggagacagaggagacatgggtccccccggacctccaggccagggcctgata
gagagaggagtccctggtccccccggtcagcctggggaaccaggcaagcctggtattcct
gggctcccgggccgagcaggagagctgggcgaggttggacggccaggggagaggggggag
cgcggagagaagggggagcgtggcgagccgggcagagatgggctacaaggtcctcctgga
ctcccagggccgaagatcgatgtggatggaatcgttcccggaggccctggtgtccctggg
atcaggggacctaagggtgagcccggcagagacggcgatcgcggctccaaaggagataag
ggagaaaacggagtcaagggtgaccgtggagaggctggagagaagggccgagacgggagc
ccgggtccttcaggagagcggggaccctcggggccggaagggaagccgggtcttccaggt
gcgagaggagccccgggtccagcgggcaaccacggggacccaggaccacacggtgccccg
ggacttgctggccccccggggccccagggcccgtctggcttgaagggggagcctggtgag
cctggaccacccgggcggggcctgcctggcccccagggagtggtaggtctgcccggacct
ccaggttcttccggccttgtgggcccacaggggccaccgggtttgccaggccaagtgggg
gagacagggaagcctggagtgacgggccgggatggcaaagatggagaaaggggagctcct
ggtgtccctgggccacctggcctaccaggccctgttggacccaagggggagcctggagct
acaggactcccaggacaggctgttgtcgggccccctggtatgaagggtgagaagggagct
cctggaggccttgctggggatctagtgggagaacctggatccaagggggacagaggactt
cctggacctcgaggagagaagggtgaggccggacgacctggggagcctggagatcccgga
gaagatggccggaaaggggcaacgggactccgaggtgaaaagggctccatgggaattggg
gtccagggaccccctggatcagatgggcccccaggcccaaagggagattcaggctttcca
ggccctcctggacccccagggacaccaggtgttgtgggattccctggccaagcaggcccc
agaggagagtctgggcagccgggcctttctggagaaaggggtgtaacgggtccccccggg
aaagaaggggtcccaggccctcccgggcttccaggaccagccggggcagtgggacctctt
ggagcccccggacccaaaggagacaagggagatcctggagtggggcagccaggagcccga
ggagagagaggggatccaggagtccgaggtgaaaatggccgtcctggtctggagggagac
agaggccccgcaggcccgccagggagtcggggagagcgaggggacaagggtgatgccgga
ggccctggactgaagggtgacaagggtgacacagctgtgatcgaggggccccctgggcct
cgaggccccaagggagagacgggtgaccgaggcctaagaggcttggatggtgacaaaggg
gctcgaggggacaatggccttcctggggaaaagggcgtgaagggagagctgggcgacaga
ggctctccgggatcccagggtgcccgaggccccgtggggcagaagggcgacagtggggac
ccagggatgcctggggtgccgggcctctctgggaagggtggcgcccctggtgcccatgga
gagaagggagagccaggctttatgggcccccgaggcctcaagggagatcgaggcctgaaa
ggggcctgtggccaagacggagagaaaggggacaagggggaagcaggaatccacggacgg
cctggacttcctggacggaaaggagagatgggggagatggggctgcctggcctgtcaggg
cacccaggaaaggagggtttgattggccccaagggtgaccgaggctttgatggtcagcaa
ggaccgaagggtgaccagggcgagaaaggggagcgcggacttcctggtgttggggggatc
cagggtcccaggggcagtgatggagcctctgggcctcctgggcctcctggtagcatcggc
cctaaaggtcccgagggcattcaggggcagaagggtgagaggggcccccctggggagagt
gtggttggtgcccgaggggtccctggaatcccaggagagcgaggggaacagggaagcgta
ggtcccatgggcccgcgaggagaaaaaggggagccctccatgacggcctccgacatccgg
agcttcattcgacaggagatgagtcagcattgcgcctgtggcggtcagtatatagcatca
ggatcaagaccccttcccagttactctgcagataccccaggccctgacccctggccccat
ccaatccctgtgctgaggctctcccatgcagaggaggaagggccggggcctccagaagat
gatgagtactccatggaggattatgaggacatggagggggatgctactgaggagccctgg
gctgctggtcatggcctgtgctctctgccactggatgaaggctcttgctctaattataca
ctacgctggtatcaccgccccggtaggggctgtcatccctttgtgtttggtggctgtgag
ggcaatgccaaccgcttcagttcccgggaggactgtgaacgacaatgtctaccccatgga
ggcccaggtagtgctccccctctctcctag
DBGET
integrated database retrieval system
