Sarcophilus harrisii (Tasmanian devil): 100929184
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Entry
100929184 CDS
T02286
Symbol
PCDH1
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100929184 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shr01009
]
100929184 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
shr04515
]
100929184 (PCDH1)
Protein phosphatases and associated proteins [BR:
shr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100929184 (PCDH1)
Cell adhesion molecules [BR:
shr04515
]
Cadherins
Protocadherins
100929184 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
100929184
NCBI-ProteinID:
XP_031809315
UniProt:
A0A7N4NL17
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All DBs
Position
2:complement(374596871..374618389)
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AA seq
1232 aa
AA seq
DB search
MDSGAGSRRCLKAALPTPLPARMGPPRSSLGSWWRLLLPPVLLALLLAPSPGAATRVVYK
VQEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLREC
QNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLMIPENTNV
GTLFPIPLASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGHLDRERW
DSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFEQPSYEAELSENSPVGHSVIQVK
ANDSDQGVNAEIDYTFHQAPEVVRRLLRLDRATGLITVQGPIDREDVSVLRFFVLAKDRG
INPKSARAQVVVTVKDMNDNAPSIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRD
EGENAVVMCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIQIVAVDSGN
PPLSSTNSLKVQVMDVNDNAPVFTQSLTEVAFPENNEPGALVTEVSASDADSGPNAQLVY
SLEPEPATKGLFSISPETGEIWVKASLDREQRDSYELKVVAADQGNPSLQGTATVLVNVL
DCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDADKGENARVQLTVEQDNGDFVIQNG
TGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFVTAPSNTSH
RLLTPQTRPGETVSQVTAEDIDSGVNAELAYVIAGGNPYGLFQIGPQSGAITLEKEIERR
HHGLHRLVVRVSDRGKPSRHGTALVHLYVNETLANRTFLENLVGHSLDTPLDIDIAGDPE
YERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPGS
KGPKGPKGKGRKSKSPKPAKPVEDEDDTGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSP
DLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYR
TNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLA
LPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSR
RSKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEERNTKMAPVRLLPSYSAFSNSSHDSCK
DSTLEEIPLTQTSDFPPAATPSAQTAKREIYL
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggacagcggagccgggagccggcgctgcctcaaggcggcccttccgaccccgctgcct
gccaggatggggcccccaaggtctagcctgggctcctggtggaggctgttgctacctccc
gtgctgctggccctgctgcttgccccctccccaggagccgccaccagggtggtgtacaag
gtgcaggaggagcagccacctaacaccctcattggcagcctggctgccgactacggcttc
ccggatgtgggacacctgtataagttggaagtgggcgccccgtaccttcgagtggatggc
aagacgggggacatcttcaccacagagacctccattgaccgggaagggctgcgtgagtgc
cagaaccagctgccgggggagccctgcatcctggagtttgaggtgtccatcacggatttg
gttcagaatggcagcccccgactcctggagggccagattgaagtgcaagacatcaatgac
aacacgcccaactttgcctccccggtcatcacactgatgattccagaaaacaccaatgtg
ggcaccctcttccccatccctttggcttcggaccgcgatgctggccccaatggtgtggcc
tcctacgagctacaggccggacctgaggcccaagagctctttgggctccaagtggctgag
gaccaagaggagaagcagccgcagctcattgtcatgggccacctggaccgggaacgctgg
gactcctacgacctgacgatcaaggtccaagatggcggcagcccgccgagggccagcagc
gccctgctgcgggtcaccgtgctggataccaatgacaacgcacccaagtttgagcagcct
tcctatgaggcagaactgtcggagaacagtcctgtgggccactctgtcatccaggtgaag
gccaacgactctgaccagggtgtgaatgcggaaatagactacacgttccaccaggctccc
gaggtggtgcgccggctgctgcggctggaccgggccacggggctgatcacggtccagggc
cccatagaccgtgaggacgtgagcgtccttcgcttctttgtgctggccaaggaccggggg
attaaccccaagagtgcccgcgcgcaggtggtggtgacggtgaaggacatgaatgacaac
gcgccctccatcgagatccgtggcatcgggctggtgacgcaccaggacggcatggccaac
atctcggaggacgtggcagaggagacggccgtggccctggtgcaggtgtccgaccgggac
gagggcgagaacgctgtggtcatgtgtgtggtggcgggagacgtgcccttccagctgcgc
caggccagcgagaccggcagcgacagcaagaagaagtacttcctccagaccaccacgccg
ctcgactacgagaaggtcaaggactataccatccagatcgtggctgtggactcgggcaac
ccgccgctctccagcaccaactccctcaaggtgcaggtgatggacgtgaacgacaacgcg
cccgtcttcacccagagcctcacagaggtcgccttccccgagaacaacgagcccggcgcc
cttgtcaccgaggtcagcgccagcgacgctgactccggccccaatgcccaactggtctac
tccctggagcctgagccggccaccaaggggctcttcagcatctccccggagaccggcgag
atctgggtgaaggcgtcgctggaccgtgagcagagggacagctacgagctgaaggtggtg
gcggccgaccagggcaaccccagcctgcagggcacggccacggtgctcgtcaacgtgctg
gactgcaacgacaatgaccccaagttcatgctgagcggctacaacttctcggtgatggag
aacatgccggccctgagccctgtaggtatggtgaccgtcatcgacgccgacaagggggag
aacgcgcgcgtgcagctcacggtggagcaggacaacggcgactttgtcatccagaacggt
accggcaccatcctctccagcctgagcttcgacagggagcagcagagcacctacaccttc
cagctcaaggctgtggacgggggtgtgccgccgcgctcggcctacgtcggagtcaccatc
aacgtgctggacgagaacgacaacgcgcccttcgtcaccgcgccttccaacacctcccac
aggctgctgacgccccagacccggcccggggagacggtgagccaggtcacggctgaggac
atcgactcgggcgtcaacgccgagctggcctacgtcatcgccggcggcaacccctatggg
ctcttccagatcgggccgcagtccggcgccatcacgctggagaaggagatcgagcggcgg
caccacgggctgcaccggctggtggtgagggtcagtgaccgcggcaagccctcgcgccac
ggcacggcactggtgcatctctacgtcaatgagaccctggccaaccgcacctttctggag
aacctggtgggccacagcctggacacgcccctggacatcgacatcgccggcgaccccgag
tacgagcgctccaagcagcgtggcaacatcctctttggggtggtggcgggtgtggtggcc
gtggctctgctcatcgcgctggccgtgctggtgcgctattgtcgccagcgggaggccaag
agcggctaccaggccggcaagaaggagaccaaggacctgtatgcgcccaagcccggcagc
aagggccccaagggccccaagggcaagggcaggaagagcaagtcccccaagcccgccaag
cctgtggaggatgaggatgacaccggcctgcagaaatccctcaagttcaacctgatgagc
gatgcccccggcgacagcccccgcatccacctgcccctcaactaccccccgggcagcccg
gacctggggcggcactaccgctccaactcgccgctgccttccatccagctgcagccgcag
tccccctcggcctccaagaagcaccaggtggtgcaggacctgccccccgccaacaccttt
gtgggcactggggacaccacgtccacgggctcggagcagtactcggactacagctaccgc
accaatccccccaaataccccagcaagcagttacctcaccgccgtgtcaccttttcggcg
actagccaggcccaggagctgcaggatccatcccagcatagttactatgacagtgggctg
gaggagtcagagacaccctccagcaagtcatcctctggcccccggcttgggcccctggca
ctgcccgaggaccactatgaacgaaccacccctgatggcagcataggagagatggagcat
cctgagaacgaccttcggcccttgcccgacgtagccatgacgggcacatgcacacgggag
tgcagcgagtttggccactcggacacatgctggatgcctggccagtcctccccaagccga
cggtccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgaggcggg
caggagcccgcaggcgccggcagccctagccccccggaagaacgcaacaccaaaatggcc
cccgtccgcctgctgccctcgtacagtgccttctccaacagtagccatgattcctgcaag
gactctaccttggaggagatccctctcacccagacctcggacttcccgccggcggccaca
ccctctgcccagacggccaagcgcgaaatctacctgtga
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