Sarcophilus harrisii (Tasmanian devil): 100930210
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Entry
100930210 CDS
T02286
Symbol
EXOSC1
Name
(RefSeq) exosome complex component CSL4 isoform X1
KO
K07573
exosome complex component CSL4
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100930210 (EXOSC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100930210 (EXOSC1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100930210 (EXOSC1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
100930210 (EXOSC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
100930210
NCBI-ProteinID:
XP_031812066
Ensembl:
ENSSHAG00000018219
LinkDB
All DBs
Position
2:complement(590948379..590953306)
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AA seq
212 aa
AA seq
DB search
MDRRPASQNGSWEAVEAAPPSRYCIPGERLCHLDEASPGSGTYTRHGYIFSSLSGCVVKT
SDNGELPVVSVTRETESQMLPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIR
KEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESAGVQ
MVPISWCEMQCPRTHTKEFRKVARVQPEFLQT
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atggaccgacgcccggcttcccagaacggctcttgggaagcggtggaggcggcgccgccg
tcgcggtactgcatcccgggcgagcgactctgccacctggacgaggccagccccggcagc
ggcacctacacccggcacggctacatcttctcctcgctctcgggctgcgtggtgaagacg
agcgacaacggcgagctgcctgtggtgtccgtgaccagagagaccgagtcccagatgctg
ccggacgtgggaacgatcgtcacctgcaaagtctccagcattaattctagatttgccaaa
gtacatatcttatatgtgggatccacaccgctcaagaactcctttagaggaactatcagg
aaagaagatgttcgagctactgaaaaagataaggtcgaaatatataagagtttccgccca
ggtgacattgtgctggctaaagtgatttccctaggtgatgcacagtccaactacctgttg
acaactgcagaaaatgagctgggggtagtggtggctcacagtgaatcagcaggtgtccag
atggtacccatcagctggtgtgagatgcagtgccctaggacacacaccaaagaattccga
aaagtagcacgtgtacagcctgagttcctgcagacatag
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