Sarcophilus harrisii (Tasmanian devil): 100930330
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Entry
100930330 CDS
T02286
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03082
ATP-dependent chromatin remodeling
shr04714
Thermogenesis
shr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100930330 (SMARCC1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100930330 (SMARCC1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100930330 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shr03021
]
100930330 (SMARCC1)
03036 Chromosome and associated proteins [BR:
shr03036
]
100930330 (SMARCC1)
Transcription machinery [BR:
shr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100930330 (SMARCC1)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100930330 (SMARCC1)
PBAF complex
100930330 (SMARCC1)
GBAF(ncBAF) complex
100930330 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
SpeFL
Motif
Other DBs
NCBI-GeneID:
100930330
NCBI-ProteinID:
XP_031816685
Ensembl:
ENSSHAG00000000895
UniProt:
G3VCU6
LinkDB
All DBs
Position
1:complement(91019162..91177688)
Genome browser
AA seq
1107 aa
AA seq
DB search
MAAAAGGGGGGAPGTVTGGAGPGGAAAAAVGLALCRRKDGGPAGKFWESPETVSQLDSVR
VWLGKHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGG
TLCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLSRPNIYLIPDI
ELKLANKLKDIVKRHQGTFTDEKSKASHHIYPIPTSLEDEDWLRPVMKKDKQVLVHWGFY
PDSYDTWVHASDVDAEIEDPPIPEKPWKVHAKWILDTDIFNEWMNEEDYEVDENKKPVSF
RQRISTKNEEPVRSPERRDRKASASTRKRKHSPSPPPPTPVESRKKTGKKGQTSLYGKRR
GQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAV
TAGGKEDEDPSKGDQSRSIDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFN
GKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVN
YQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRTPQVPAAQQMLNFPEKNKEKPTDL
QNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDE
CILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAK
AALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLDGT
EEEKMETETDGQQAEKVENKSENETDENEKTQDGENEKSIEKEQDSEVNEDTKSEEKDGE
ENKENDACKERENDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVA
LLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQ
MEQQQHGQNTQQSHQHSGGPGMNPIGAPGHPGMLPHQQPPPYPMMHHQMPPPHPPQPGQM
PGPGSMMPGQPMPGRMIPAVAANIHSSGGGPPPPVMPPMPGNIIGPRVPLAAPNGMYPPP
PQQQPPPPPPTDGVTPPPAAAPASSAP
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggaggcggcggcggcgccccggggacggtgacgggcggcgcg
gggccggggggggcggcggcggcggccgtgggtctggcgctgtgtcggaggaaggacggg
ggcccggcgggcaagttttgggagagcccggagacggtttctcagctggactcggtgcgg
gtctggctgggcaagcactacaagaagtatgttcaagcagatgctcctacaaataaaact
ttggctgggctggtagtacagcttctacaatttcaagaagatgcctttgggaaacatgtc
accaatcctgccttcactaagcttcctgcaaagtgcttcatggatttcaaagccgggggt
accttgtgtcacatccttggggctgcttacaagtataaaaacgaacagggatggagaaga
tttgatctgcagaatccttcccgaatggatcgcaatgtggagatgtttatgaacattgaa
aaaacactggttcagaacaactgtctgagcagacctaacatctacctcattccagacatt
gaactgaagttggctaacaaactaaaggacattgtcaaacgacatcagggaacattcact
gatgaaaaatcaaaagcctctcatcacatttatcctattcctacctcactggaggatgaa
gactggttgagacctgtgatgaaaaaagacaagcaggtgctagtacattggggattttac
ccagacagctacgatacttgggttcatgctagtgatgttgatgctgaaattgaagatcct
cccattccagaaaaaccgtggaaagttcatgcaaaatggattttagacactgatatcttt
aatgaatggatgaatgaagaagattatgaggtggatgaaaacaagaaaccagttagtttt
cgtcagcgcatttcaacaaagaatgaagagccagtccgtagtcctgagagacgagatagg
aaggcatcagcaagtacaagaaagagaaaacattcgccttctcctccacctcctactcct
gttgaatcaaggaaaaagactggaaagaaaggacaaactagtctctatgggaaaaggcga
ggtcagaaagaagaggatgaacaagaagatctcactaaggatatggaagatccaacacct
gtacctaacatagaggaagtggtacttcctaaaaatgtgaatccaaagaaagacagtgaa
aatacaccagttaaaggaggaacagtagcagatctagatgagcaggatgaagaagcagtg
acagcaggaggaaaggaagatgaggatcccagtaaaggtgatcaaagtcgatcaattgac
ccaggtgaagataatgtaacagagcagacaaatcatattattattccaagttatgcttca
tggtttgattacaactgtattcatgtaatagaacgtcgtgctcttcctgaatttttcaat
ggaaaaaacaaatctaaaactccagaaatatatttggcataccgtaatttcatgattgac
acatatcgcttaaaccctcaagaatatttgaccagcactgcttgtaggcggaatttgaca
ggagatgtttgtgctgttatgagggttcatgcttttctagaacagtgggggcttgttaat
taccaagttgatccagaaagtagacctatggcaatgggacctcctccaactcctcacttt
aatgtgctagctgataccccttctgggctagtgcctctccatctcagaacacctcaggtc
cctgctgctcagcagatgttgaattttcctgagaaaaataaggagaagcctactgactta
cagaactttggtctccgcacagacatttactctaagaaaaccttagcaaaaagtaaagga
gccagtgctggaagagagtggactgaacaggagacactgctgcttttagaggccctcgag
atgtacaaagatgattggaataaagtatcagaacatgttgggagtcgaactcaggatgag
tgcattctccactttctgagacttcctattgaggatccttatcttgagaactcagatgcc
tcccttggacccctggcttatcagcctgtccctttcagtcagtcaggaaacccagtgatg
agtacagttgcatttttggcatctgtggtggatccacgggtagcatctgcagcagctaaa
gctgcattagaggagttttcccgggtccgggaagaagtaccattggaattagttgaagct
catgtcaagaaagtacaggaagcagcaagagcctctggaaaagtagatccaacgtatggt
ctagaaagtagctgcattgcaggcactggtcctgatgagccagagaaacttgatggtact
gaagaagaaaaaatggaaactgagacagatggacaacaggctgaaaaggttgaaaacaaa
agtgaaaatgaaactgatgaaaacgagaaaacacaggatggagaaaatgagaaaagtatt
gagaaagaacaagatagtgaagttaatgaggataccaaatcagaagagaaggatggtgaa
gagaataaggaaaatgacgcctgtaaagagagagaaaatgatactggaaagaagaaagtg
gaacatgaaatttctgaaggaaatgtagccacagctgcagcagctgctcttgcctctgct
gccaccaaagcaaagcaccttgctgctgtagaagaaagaaaaatcaaatctctggtggcc
ctgctggtagagacacaaatgaagaagctggagataaaactccgtcattttgaggaactg
gaaacaatcatggatagggaaaaggaagctttagaacagcagagacagcagttactcact
gaacgccagaactttcacatggagcagctaaaatatgctgaattaagggctcgacagcaa
atggagcagcagcagcatgggcagaacactcagcagtcccaccagcattctggaggacct
ggtatgaacccaattggagcaccagggcatccaggaatgttacctcatcagcagccccct
ccttatcccatgatgcatcatcagatgccccctcctcatccacctcaaccaggtcagatg
ccaggtcctggttccatgatgcctggacagcccatgccaggtcgtatgattccagctgtt
gcagctaacatccattcttctgggggtggtcctcccccacctgtcatgccaccaatgcct
gggaacatcattggaccacgagtaccccttgcagcacctaatggcatgtacccccctcct
ccgcagcaacagcccccaccacctccgcctaccgatggtgtcactcctcctcctgcagca
gcaccagcctcctcagctccctaa
DBGET
integrated database retrieval system
