Sarcophilus harrisii (Tasmanian devil): 100930353
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Entry
100930353 CDS
T02286
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr05165
Human papillomavirus infection
shr05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100930353 (TNR)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100930353 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100930353 (TNR)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100930353 (TNR)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100930353 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100930353 (TNR)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100930353 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
EGF_Tenascin
Pur_ac_phosph_N
Fn3_Dep-1_3rd
Fn3_VIN3
EGF_2
FN3_Tor_3rd
Interfer-bind
Uroplakin_II
DUF7949
Lzipper-MIP1
Motif
Other DBs
NCBI-GeneID:
100930353
NCBI-ProteinID:
XP_003767504
Ensembl:
ENSSHAG00000014465
UniProt:
A0A7N4NX58
LinkDB
All DBs
Position
4:complement(62806791..63496809)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAVDGETVVLKNMLIGVNLILLGSVLKPSECQLEVTTERVRRQAVKEEGGFVNYSASSKE
YPMVFNHVYNINVPLDSLCSSGLEASAEQEVSAEDERMTEYMDHTSDSESQVTFTHRINL
PKKACKCSSSTQLMQELLSRIEMLEREVSLLRDQCTSNCCQENAATGQLDYIPHCSGHGN
FSLESCGCICNEGWFGKNCSEPYCPMGCSSRGMCVEGQCVCDSDYSGDDCSELRCPTDCS
NRGLCVDGECVCEEAYTGEDCSELRCPGDCSGKGRCSNGTCFCQEGYVGEDCGQRRCQNA
CSGRGHCQDGLCFCEEGYQGPDCSAVAPPEDLRVAAISDRSVELEWDGPMAVTEYVISYQ
PTVLGGLQLQQRVPGDWSAITIKELEPGLTYNISVFAVISDTLSLPAIAKVSTHLSTPQG
LQFKTITETTVEVQWEPFSFSFDGWEISFIPKNNEGGVIAQLPSDVTSFNQTGLKPGEEY
IVNVVALKDQARSPPTSASISTLIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGL
VDGEGGRTTFRLQPPLSQYSVQALRPGSHYQVSVSAIRGTNESTSTTTHFTTEIDAPKNL
RVGSRSATSLDLEWDNSEAEVQEYKVVYSTLAGEQYHELMAPKNSGPTTRATLTNLVPGT
EYGVGISAIMGNQQSVPATMNARTDLDSPRDLIVTASSETSISLIWTKAGGPIDHYRITF
TPASGMSSEITVPKDRTSYTLTDLEPGTEYIISVTAERGRQQSLESTVDAFTGFRPITHL
HFSHVTSSSVNITWSDPSPPADRLILNYNPRDKEEEALEVSLDATKRHAILMGLQPATEY
IVNLVAVHGMVTSEPIVGSITTGIDPPKDIIISNVTKDSVTVSWRPPIASFDYYRVSYRP
TQVGRLDSSVVPNTVNEFTVTNLYPATEYEISLNSVRGREESERICTLVHTAMDNPIDLV
ATNITPTEALLQWKSPVGEVENYILILTHSSVAVETILVDGINEEYQLVGLLPNTHYTII
MYATNGPLASSTIEANFTTLLDPPTNLTASEVTRQSALISWQPPMADIENYILTYKSNDG
SRKELIVDAEDNWIRLEGLSENSEYTVLLQSAQDAVHSVITSASFTTGGRVFPHPQDCAQ
HLMNGDTLSGVYTISINGDLSQKVQVYCDMSTDGGGWIVFQRRQNGLTDFFRKWADYRVG
FGNLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAVYAYYDKFSIGDSRNLYKLRIGDY
NGTSGDSLTYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQG
INWYHWKGHEFSIPFVEMKMRPYNHRPTVGRKRRSLQL
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcagttgatggggaaacagtggtactgaagaacatgctcattggggtcaatctgatc
ctgcttggttctgtcctcaaaccctctgagtgtcagctggaagtgacaacggaaagggtc
aggagacaggcagtaaaggaggaagggggatttgtcaactatagtgcatccagcaaagag
tatcctatggtcttcaaccatgtatataatatcaatgtccccttggacagcctctgttcc
tctggtctggaggcttcagcagagcaggaggtgagtgcagaagatgagaggatgacggaa
tatatggaccacacttcagacagcgagagccaggtcaccttcacccacaggatcaacctt
cccaaaaaggcctgcaaatgttcctcctctacccagctcatgcaggaacttctgagtcga
attgaaatgctggagagggaagtgtctctgcttcgagaccaatgcacctccaactgctgc
caggaaaatgcagccacaggtcaactggattatatcccacactgcagtggtcatggaaat
ttcagcctggagtcctgtggttgcatctgcaatgaaggctggtttggaaaaaactgttca
gaaccctattgccctatgggctgctccagccggggaatgtgtgtggaaggccagtgcgtg
tgtgacagtgactatagtggtgatgactgctcggagctccggtgcccaacggactgcagc
aatcgagggctctgcgttgatggcgagtgtgtctgtgaagaggcttacacgggagaagac
tgcagtgaactgaggtgtcctggggactgctcagggaaggggagatgctccaacggcact
tgcttctgccaagagggctatgttggggaagactgtggccagcgccggtgccagaatgcc
tgcagtgggcgagggcactgtcaagatgggctctgcttctgtgaggaagggtaccagggt
cctgactgttcagcagttgctcctcccgaggacctgcgtgtagcagcaatcagcgacagg
tctgttgagctggaatgggatggaccgatggcagtgacagaatatgtgatctcttaccag
ccaacggtcctgggaggccttcagctccaacaacgggtgcccggggactggagtgccatc
accatcaaggagctggagccaggacttacctacaacatcagtgtctttgctgtcattagc
gacaccctcagtctccctgccattgccaaggtgtccactcatctctccacccctcaaggg
ctgcaattcaagactatcacagagaccaccgtggaggtgcaatgggaacccttctctttc
tcattcgatgggtgggagatcagcttcatcccaaagaacaatgaagggggagtgattgcc
caactccctagtgatgtcacatccttcaaccagaccgggctaaagccaggggaagagtac
atcgttaatgtggtggctctcaaagatcaagcacggagccccccaacatcagccagcatc
tcaactctcattgatggacctacacagatcttagttcgagatgtctcagacactgtggcc
ttcgtggagtggaccccgcctcgagccaaagttgatttcattctcctgaaatacgggcta
gtggatggagagggtggtaggactactttcaggctgcagcctcctctgagtcagtattct
gtgcaagccttaagacctggttcccactatcaagtctcagtcagtgccattcgagggacc
aatgaaagtacttccaccaccactcacttcacaacagagatcgatgcccccaagaattta
cgggtgggctcccgttcagcaaccagcctggaccttgaatgggacaacagtgaagctgaa
gttcaggagtacaaggtggtatacagcaccctggcgggtgagcagtaccatgagctgatg
gcccctaagaattcaggccctaccaccagagccaccctcacgaatctcgtgccaggaaca
gaatatggtgttgggatatcagcaatcatgggcaatcaacagagtgtaccagccaccatg
aatgctaggactgatctggacagtccacgtgacctcatagtgacagcttcctcagagacc
tccatctccctgatctggaccaaggccggcggccccattgaccactacagaatcaccttc
acacccgcatctggaatgtcctcggagatcacggtgcccaaagacaggacctcttacaca
cttacagacctggagcccggtactgaatacatcatctcagtcactgcggagaggggcagg
cagcagagcctggaatccacggtggacgccttcacaggtttccgtcccatcacccatcta
cacttctctcatgtcacttcatccagtgtaaacatcacctggagtgacccatcccctcca
gctgacaggctcatcctgaactacaatccccgagataaggaggaagaggctttagaagtc
tcactagatgctaccaaaaggcacgccattctgatgggtctgcaaccagctactgagtat
attgtgaacctggtggctgttcatgggatggtaacctctgagcctattgtgggctccatc
actacagggattgatcctcctaaagatataataataagtaatgttaccaaggactctgtg
actgtctcctggaggccgcccattgcatcttttgattactatagagtatcctatcgaccc
acacaagtgggaagactagacagctctgtggtacccaacacagtcaacgaattcacagtc
accaacctgtatccagccacagaatatgaaatcagcctgaacagcgttcgaggccgagag
gagagtgagcgcatctgcacacttgtacatacagccatggacaatcccatagatctggtt
gccaccaacatcaccccaacagaagccctgctacagtggaaatcacctgttggtgaagtg
gaaaactacatccttattctaacacactcctcagttgccgtggaaacaattctagtggat
ggaatcaatgaagagtaccagcttgtgggtctgcttcccaatactcactacacaatcatc
atgtatgctaccaatggacctctcgccagcagcaccattgaagccaatttcaccaccctt
ctggatccacctacaaacttgactgccagtgaggtcaccagacagagtgccctgatttcc
tggcagcctcccatggcagacattgagaactacatcttgacctataaatccaatgatgga
agccggaaagagttgatagtggatgcagaagacaattggatccgcctagaaggactttca
gagaactctgaatatacagtgctcttgcagtcagcccaggatgctgttcacagtgttatt
acctctgctagcttcaccacaggcggtcgggtgttccctcaccctcaggactgtgcccaa
catttgatgaatggagatactctcagtggggtttataccatctccatcaatggggatctg
agccagaaggtccaggtatactgtgatatgtcaacagatggaggtggctggattgtgttc
cagagacggcagaatggcctgacagattttttccggaaatgggcagattaccgtgttggt
ttcggaaacttagaggatgagttttggctgggactggataacatacacaagatcacatcc
caagggcgatatgagttgcggatagacatgcgagatggccaagaagcggtttacgcctat
tatgacaagttctctattggggatagtagaaacctctacaagctccgaataggagactac
aatggcacttctggggattcccttacttatcaccaggggaggccattctccactgaagac
agagacaatgatgttgctgttaccaattgtgccatgtcctacaagggagcttggtggtat
aagaactgccaccgaaccaacctaaatggaaagtatggtgaatccaggcacagtcagggg
atcaactggtatcactggaaaggccacgagttctccatcccctttgtggaaatgaagatg
cggccttacaaccaccgacctacagttggaagaaaacgacggtccctacagctgtga
DBGET
integrated database retrieval system