Sarcophilus harrisii (Tasmanian devil): 100930382
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Entry
100930382 CDS
T02286
Symbol
ATG13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04136
Autophagy - other
shr04140
Autophagy - animal
shr04211
Longevity regulating pathway
shr05010
Alzheimer disease
shr05014
Amyotrophic lateral sclerosis
shr05016
Huntington disease
shr05017
Spinocerebellar ataxia
shr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100930382 (ATG13)
04136 Autophagy - other
100930382 (ATG13)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
100930382 (ATG13)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
100930382 (ATG13)
05014 Amyotrophic lateral sclerosis
100930382 (ATG13)
05016 Huntington disease
100930382 (ATG13)
05017 Spinocerebellar ataxia
100930382 (ATG13)
05022 Pathways of neurodegeneration - multiple diseases
100930382 (ATG13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100930382 (ATG13)
03029 Mitochondrial biogenesis [BR:
shr03029
]
100930382 (ATG13)
Membrane trafficking [BR:
shr04131
]
Autophagy
Autophagosome formation proteins
ULK complex
100930382 (ATG13)
Atg1 complex
100930382 (ATG13)
Mitochondrial biogenesis [BR:
shr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
100930382 (ATG13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
100930382
NCBI-ProteinID:
XP_031798882
Ensembl:
ENSSHAG00000016284
LinkDB
All DBs
Position
6:232469713..232501130
Genome browser
AA seq
549 aa
AA seq
DB search
MDTDLSSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGREYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRQFERTPPIMGIVIDHFVDRPYPSSSPMHPCNYRTAGEDPGL
AYPSVEDSQEVCTTSFSTSPPSQCVFTVSKAHFQTHTPVVTDTLRVPMAGLAFSHQLASS
RLSYQPAALGVGSAELAHPVVFAAGSSAAHPHQLMVPGKEGGVPPAPSQPAHGTQADQDK
MATCTPSDGAHYIVTPSSSEDTETVSNSSEGRGSPHDVLEALLVRKVGALVNNSVDQVTM
TNLDIPFAMFAPKNFEPEDNDPMVHPPDSPDTESPLQGSLHSDGSSGGSSGNTHDDFVMV
DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVK
EFDAFVETL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggacactgatctcagttcccaggacaggaaggacttggacaagttcatcaagtttttt
gccctgaagacagtccaagtgatagtccaggcacgtctgggagagaagatttgtactcgt
tcctcatcttccccaacgggatctgactggttcaacttggccatcaaggacatcccagag
gtcacccatgaagccaagaaagcactggcagggcagctgcccgccgtggggaggtcgatg
tgtgtggaaatctcactcaagacttcagagggagattccatggaactagaaatttggtgt
ctggaaatgaatgaaaagtgcgacaaagaaattaaagtttcctacactgtgtacaatagg
ctgtcattactgctgaagtctctgcttgctatcactagagtgacaccagcttatcgactc
tccagaaaacagggccgtgaatatgtcatactctacaggatatactttggagaagtccag
ttgaacggcttgggagaaggtttccagactgtccgcgttggcacggtgggcacaccagtg
ggcaccatcacgctgtcctgtgcctaccgaattaacctggccttcatgtctaccaggcag
tttgagaggacccctcctatcatggggattgtcattgatcattttgtggaccgtccctac
cccagctcctcgcccatgcacccctgcaactacaggacggccggggaggaccctgggctt
gcctacccctctgtggaggactctcaggaagtctgcaccacctccttctccacctccccc
ccatcccagtgtgtgttcactgtcagtaaggcccattttcagacccatactccggtggtg
acggataccctgagggtccccatggcaggactggccttttcccaccaactcgccagctct
cgcctttcctatcagcccgccgctctgggagttggatcagccgagctggcccatccagtg
gtctttgctgctggctcgagcgctgcccaccctcaccagttaatggtcccggggaaggaa
ggtggggtgcctcccgctcccagccaacctgcccacggcacccaggctgaccaggacaag
atggccacctgtaccccgtcggatggcgcccactacatcgtcactccttctagcagcgaa
gacactgagaccgtgtccaacagcagcgaaggccggggctccccccacgatgtcttggag
gccctcctggtgcgcaaagtgggagcgctggtcaacaactcggtggatcaggtaacaatg
accaacctggacatcccctttgccatgtttgctcccaagaactttgagccagaggataat
gatcccatggtccatcctccggactccccggacaccgagtctcctctccagggcagctta
cactctgatgggtccagcggcggcagcagcggaaacacgcacgacgactttgtcatggtc
gactttaagcccgccttctcaaaggatgacattctgcccatggacttggggaccttctac
cgggagtttcagaacccccctcagctgagcagcctctccatcgacatcggagcccagtcc
atggccgaggacctggactcgctcccagaaaaactggccgtgcatgagaagaatgtcaaa
gagttcgatgcctttgtagagaccctctag
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