Sarcophilus harrisii (Tasmanian devil): 100930593
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Entry
100930593 CDS
T02286
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100930593 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100930593 (XAB2)
03041 Spliceosome [BR:
shr03041
]
100930593 (XAB2)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100930593 (XAB2)
Spliceosome [BR:
shr03041
]
Complex B
Other components
Prp19-related factors
100930593 (XAB2)
Complex C
100930593 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
Suf
TPR_8
TPR_19
TPR_15
TPR_16
ARM_TT21
TPR_MalT
ARM_TT21_C
TPR_1
TPR_NPHP3
RPN7
NRDE-2
Motif
Other DBs
NCBI-GeneID:
100930593
NCBI-ProteinID:
XP_031804201
Ensembl:
ENSSHAG00000000948
UniProt:
G3VD06
LinkDB
All DBs
Position
1:673106004..673116422
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AA seq
888 aa
AA seq
DB search
MRNSGRTDGGGITVFRLVTTAREGAGMPEIGDAVPAEAKLKTRPERPDLFFEEEDLQYEE
EILRNPFSVKCWFRYIEFKQSASQAVLNLLYERALKELPGSYKLWYHYLKARRAQVKRRC
VTDPAYEDVNNCHERALVFMHKMPRLWLDYCQFLMEQGRITRTRRTFDRALRALPITQHS
RIWPLYLRFVRSHPLPETAVRVYRRFLKLSPESAEEYIEYLRSIDRLDEAAQRLATVVND
ERFVSKEGKSNYQLWHELCDLISQNPDKVQSLNVGAIIRGGLTRFTDQLGKLWCSLADYY
IRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQFEESMIAAKMETTSELGREEEDDVD
LELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREVINTYTEAVQTVD
PFKATGKPHTLWVAFAKFYEDNGQLDDARTILEKATKVNFKQVEDLASVWCEYGEMELRH
DNYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAV
YERILDLRIATPQIVINYAMFLEEHSYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIA
RYGGRKLERARDLFEQALDGCPPKYAKTLYLLYARLEEEWGLARHAMAVYERATRAVEPS
QQHEMFNIYIKRAAEIYGVTHTRSIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARA
IYSFCSQICDPRTTGTFWQTWKDFEIRHGNEDTIREMLRIRRSVQATYNTQVNFMASQML
KVYSNATGTVSDLAPGQSGMDDMKLLEHRAEQLAAEAERDQPSRSQGKILFVRSDASRSE
LAELAQQANPEEIEIGEEEEEEEDLQPNEVSLEQQSVPATVFGSLKED
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacagcggtaggacggatggaggcgggatcacagtgttcaggctggtgactaca
gcccgggaaggagcggggatgcccgagatcggggatgcagtcccagcggaggcaaagctg
aagactcggcctgagagacccgacctcttcttcgaagaggaagatttgcagtatgaggag
gaaatccttcgcaatcctttctccgtcaaatgttggtttcggtacatcgagttcaaacag
agcgcatcgcaggctgtgctcaatctgctctatgagcgagccctcaaggagctgcctgga
agttacaagctttggtatcactacctgaaagcccgccgggcccaggtgaagcgtcgctgt
gtgactgaccctgcctatgaggatgtcaacaactgccatgagcgggccttggtcttcatg
cacaagatgccgcgtctgtggttggattactgccagttcttgatggagcaaggtcgtatt
actcggacccggcgcacttttgaccgtgctctgagagctctgcccatcactcagcactca
cgcatctggcccctctatcttcgatttgtacgttcccaccctctgcctgagactgcagtg
cgtgtgtatcgccgcttcctcaagctgagccccgagagtgcagaggaatatatcgagtat
ctacgttccatcgaccggctggacgaggcagctcagcgcctggcaaccgtggtcaatgat
gaacgatttgtgtccaaggaaggaaagtccaactaccagctgtggcatgaactgtgtgac
ctgatctcccaaaatcctgacaaagtgcagtccttaaatgtgggcgccatcatccgaggg
ggtctcacgcgtttcactgaccagctcggcaagctctggtgctccctggctgactactac
atccgaagtggacactttgagaaggcccgtgacgtgtatgaggaagcaatccagaccgtg
atgaccgtacgagactttacccaggtgtttgacagctatgcccagtttgaggagagcatg
attgcagccaagatggagacaacttccgagctggggcgggaggaagaagatgacgtggac
ctggagctgcgtttggcgcgttttgagcagcttatcagccgccggcccctcctcctcaac
agcgtcctgctacgccagaacccacaccatgtgcatgagtggcacaagcgagtggccctg
catcagggccgacccagagaggtcatcaacacatacaccgaggccgtacagaccgtagat
cccttcaaggccacaggcaaaccccacacactgtgggtcgcctttgccaagttctatgag
gataacgggcagctggatgatgcccgcaccatcctggagaaggccaccaaggtgaacttc
aagcaggtggaggatttggccagtgtgtggtgtgagtacggcgagatggagctcaggcac
gacaactatgaccaggccctgcggctgctgcggaaggcgactgccctgcctgcccgccgg
gccgagtactttgatggttctgagcctgtgcagaatcgggtctacaagtccttgaaggtg
tggtctatgctggctgacctggaggagagtctgggtaccttccagtccaccaaggccgtg
tacgagcggatcctggacctgcgcattgccaccccccagattgtcatcaattatgccatg
ttcctggaggagcacagctactttgaagagagcttcaaggcctacgagcggggcatctca
ctttttaagtggcccaatgtgtcggatatctggagcacatacttgaccaagtttattgct
cgttatggaggccgcaagctggagcgggcccgggacctctttgaacaagcactggatggc
tgcccccccaaatacgccaaaactctctacctgttgtatgcccggctggaggaagagtgg
gggctggcccgccatgccatggcagtgtatgagcgtgccacccgtgccgtggagccctcc
cagcagcacgaaatgttcaacatctacatcaaacgcgccgccgagatctatggggtcacc
cacacccgcagcatctaccagaaagccattgaggtgttgtcggacgagcacgcgcgagaa
atgtgtcttcgctttgctgacatggagtgtaaactgggggagatcgaccgggcccgggcc
atttacagcttctgctcacagatctgcgatccccggacgacgggaacgttctggcagacg
tggaaggacttcgagatccggcacgggaacgaggacaccatccgtgagatgctccggatc
cggcgcagcgtccaggccacgtacaacacacaggtcaacttcatggcctcccagatgctg
aaggtgtacagcaacgccacaggcaccgtgtccgaccttgcccctggacagagcgggatg
gacgacatgaagctgctggagcaccgggccgagcagctggcggccgaagcagagcgggac
cagccctcgcgctcccagggcaagatcctctttgtcaggagtgacgcctcccgctcggag
ctggccgaactggcccagcaggccaaccctgaggagattgagataggggaagaggaagag
gaagaggaggacctgcagcccaatgaggtgtcgttggagcagcagagcgtgccggccacc
gtctttgggagcctcaaggaagactga
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