Sarcophilus harrisii (Tasmanian devil): 100930812
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Entry
100930812 CDS
T02286
Symbol
HTT
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr05016
Huntington disease
shr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100930812 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
100930812 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100930812 (HTT)
04131 Membrane trafficking [BR:
shr04131
]
100930812 (HTT)
03029 Mitochondrial biogenesis [BR:
shr03029
]
100930812 (HTT)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100930812 (HTT)
Membrane trafficking [BR:
shr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
100930812 (HTT)
Mitochondrial biogenesis [BR:
shr03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
100930812 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
HEAT_ECM29
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
100930812
NCBI-ProteinID:
XP_031799840
Ensembl:
ENSSHAG00000008126
UniProt:
G3W1T8
LinkDB
All DBs
Position
6:complement(185649235..185857717)
Genome browser
AA seq
3126 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQPPPPPPQPPQAQPPQQPSQQQQQPPPPPPPQPGPSGVE
EPAHRPKKELSTTKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDDAESD
VRMVADECLNKVIKALMESNLPRLQLELYKEIKKNGASRSLRAALWRFAELAHLVRPQKC
RPYLVNLLPCLTRISKRTEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAFIANLKST
SPTIRRTAAGSAVSICQHSRRTQYFYTWLLNVLLGLLVPVEEEHSTLFILGVLLTLRYLI
PLLQQQVKDMSLKGSFGVTRKETEVSPSADQLIQVYELTLHYTQHQDHNVVTGALELLQQ
LFKTPPAELLQALTTSGGIGQVNVTKEEFTSRSRSGSIVELIAGGGSSCSPVLSRKQKGK
VLLGEEEGLEDDPESRSEVSSTAFAASMKSEITGELASSSGVSTPVSTSSAADSTGHDII
TEQPRSQHTLQSDPVDLAGCDLTSAATDGDEEDMLSRSSSQISAVPSDPTMDMNDGTQAS
SPISDSSQTTTEGPDSAVTPSDSSEIVLDGTESQYSGMQIGQLQDEDDESSNVLPDETAD
NFRNSTIALQQPHLLKNTGHSRQPSDSSVDRFLSKDETVEPGDHENKPSRIKGDIGHFTD
ADLAPLVHCVRLLSASFLLTGEKGALVPDREVRVSVKALAVSCVGAAVALHPESFFSRLY
KTPLETMEHPEDQYVSDILNYIDHGDPQIRGATAILCGTIIYSILNKSRFSVENWLAVVR
NSTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVKHCVMSLCNSCYSELGLQLIIDVLT
LRNSSYWLVRTELLETLAEIDFRLVSFLEARADHLHKGSHHYTGLLKLQDRVLNNVVIYL
LGDEDPRVRHVAASSLIRLVPKLFYNCDQGQTDPVVAVARDQSSVYLKLLMHETQPPSHF
SVSTITRIYRGYNLLPNITDVTMENNLSRVIAAVSHALTISTTRALTFGCCEALCLLSTA
FPVCIWSLGWHCGVPVASPSDESRKSCTVGMATTILTLLSSAWFPLDLSAHQDAIILAGN
LLAASAPKSLKSPWTSEDETSPGAMKQEEPWPALGDRTLVTMVEQLFSHLLKAINICAHV
LDDVTPGPAIKAALPSLTNPPSLSPIRRKGKEKESGEQTSVPLSPKKGNEASPASRSSDP
SGSAITSKSSSLGSFYHLPSYLKLYDVLKATHANYKVTLDLQNSNEKFGGFLRAALDVLS
QILELATLQDIGKCVEEILGYLKSCFNREPTMATVCVQQLLKTLFGTNLASQYDGLSSKP
SKSQGKAQRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDTSGWFDVLQ
KVSTQLKTNLTNVTKHRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQL
VQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQII
GIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVAVSML
LRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEALGVLN
TLFEILAPSSLRPVDMLLRSMFITPNTMASVSTVQLWISGILAILRVLISQSTEDIVLSR
IQELSFSPYLISCQVIKKLRDGGSSLPSPEDQSEMKQMKCLPEETFSRFLLQLVGILLED
IVTKQLKVEMTEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTGDGSDGSFYT
LESLSELVRSMIPTHPSLVLLWCQILLLVNYTNYNWWSEVHQTPKRHSLSSTKLLSPQMS
SDGEDSHMASTLGVCNREIVRRGALILFCDYVCQNLYDSEHLTWLIVNHIQDLISLSHEP
PVQDFISAVHRNSAASGLFIQAIQSRCENLSSPTTLKKTLQCLEGIHLSQSGAVLMLYVD
KLLCTPFRVLARMVDTLACRRVEMLLAANLQNSMSQLPVEELNRIQEYLQKSGLAQRHQR
LYSLLDRFRRTVAPETASPSPVVTSHPLDGENHLSLEMINPDQDWYVSLVKSQCCTKSDS
ALLEGAELVNRIPPDELAPFMMSKEFNLSLLAPCLSLGIREISSGQSSSLFETARSVTLD
RVASLVQELPPNHHVFQPLLPIETSAYWNQLSDFFGNAVIYHSITTLACALAQYLVLFSK
LPTHLQLPPEKESDVLKFVVVALEALSWHLIHEQMPLSMDLQAVLDCCCLTLHLPGLWNM
LSSVEYVTHVCSLIHCVRFILEAIAVQPGDQLLSPERRKNTSRGISEDEVDSNVQVPKYI
TTACEMIAEMVAALQTVLALGHKRNSGIPAFLTPVLKNIIISLARLPLVNSYTRVPPLVW
KLGWSPKPGGDFGTTLPEIPVEFLQEKEIFKEFIYRINTLGWTSRTQFEETWATLLGVLV
TQPIVMDQEESQQEEDTERTQINVLAVQAITSLVLSAMTLPVAGNPAVSCLEQQPRNKAL
KALDTRFGRKLSVIRGIVEQEIQAMVSKRDNIPTHHLYQAWDPVPSLSPAMSGTLISHEK
LLLQINTEREMGNMSYNLGQVSIHSVWLGNNITPLREEEWDEDEEDESDLPAPSSPPTSP
INSRKHRAGVDIHSCSQFLLELYSQWILPSSSAKRTPVILISEVVRSLLAVSDLFTERNQ
FEMMYLTLTELRRVHPSEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLETTLRSTHL
PSKIGALHGILYVLECDLLDETAKQLIPIISDYLLSNLRGIAHCVNLHSQQHVLVTCAAA
FYLMENYPLDVGPEFSAAVIQMCGVMLSASEESTPAIIYHCVLRGLERLLLSEQLSRLDG
ESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKISPGRTSDPNATAPDSESVIVAME
RVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVV
YKVFQTLHTTGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSQWVSAILPHI
ISRMGKSEQVDINLFCLVAIDFYRHQIDEELDRRAFQSVFEVVASPGNPYHRLLTCLQNV
HKIATC
NT seq
9381 nt
NT seq
+upstream
nt +downstream
nt
atggccaccctggagaagctgatgaaggcgttcgagtcccttaagtccttccagcagcaa
cagcagccgccgccgccgcctccccagccgccccaggcgcagcccccccagcagccgtcg
cagcagcagcagcagccgccgccgccgccgccgccgcaacccgggccgtccggggtggag
gagccggctcaccgaccaaagaaagaactttcaactactaagaaagaccgggttaatcat
tgcctgacaatatgtgaaaatatagtggctcagtctctaagaaattctccagaatttcag
aaacttttaggcattgctatggaactctttcttctgtgcagtgatgatgcagaatcggat
gttagaatggtagctgatgaatgtctcaataaagttataaaagctttgatggaatccaat
cttcccaggttacagttagaactctacaaggaaataaaaaagaatggtgcttctcgcagc
ctgagagctgccctctggaggtttgctgaacttgcccatctggttcgacctcagaaatgc
agaccatatttggtaaatcttttgccttgtctgactcgaataagcaagagaacagaagaa
tctgtacaagaaactttggcagctgctatacccaaaattatggcatcttttggcaacttt
gcaaatgacaatgaaattaaggttttattaaaagctttcatagctaatctcaagtcaact
tctcctacaatacggcgaacagcagctggatcagcagtgagcatctgccagcattcaagg
aggacacagtatttttatacctggttacttaatgtacttttaggcttactagttcctgtt
gaggaggagcattctactctttttattcttggagtattgctcacattgaggtatttaatt
cccttgctccaacagcaagtcaaggacatgagtttgaaaggcagctttggtgtcactaga
aaagaaactgaagtctcaccttctgcagaccagctcatccaggtatatgaattgactttg
cattacacccagcaccaagatcacaatgttgtaactggagcattagaattattgcaacaa
ctttttaaaacacctccagctgagcttcttcaagccctgaccacttcgggtggtattgga
caggtcaatgtgaccaaagaagagtttactagcagaagtcgcagtggaagtattgtggaa
cttatagctggaggggggtcttcatgcagccctgttctttcaagaaaacaaaaaggtaaa
gtgctcttaggagaagaagaaggcttagaagatgacccagaatcaaggtctgaagttagc
agcacagcatttgcagcctcaatgaagagtgaaatcacaggtgaattggcttcttcatca
ggtgtatctactcctgtctccacaagttctgctgctgattccacaggtcatgatatcatc
actgagcagcccaggtcacaacatactttacagtcagatcctgttgatctggctggctgt
gacttgacaagtgcagccacagatggggatgaagaagatatgcttagtcgcagctcaagc
caaatcagtgctgtcccttctgatcctactatggacatgaatgatgggacccaggcttca
tcaccaattagtgatagttcacagacaactacagaaggtccagattcggctgtgactcct
tcagacagttctgaaattgtattagatggaactgaaagccagtattcaggaatgcaaatt
ggacaattacaggatgaagatgatgaatcatcaaatgttcttcctgatgagactgcagac
aatttcagaaactctactattgcacttcagcagccccatctcctgaaaaacacaggacat
agcagacaaccatctgacagcagtgttgatagatttttgtcaaaagatgaaactgtggag
ccaggtgatcatgaaaataagccttctagaataaaaggagatatcggacactttactgat
gctgatttggcacctctagtccattgtgttcggttgttatctgcttcctttttgctgact
ggagaaaaaggtgcattagttccagatagagaggtaagggtaagtgtaaaggctttggca
gtaagttgtgttggagcagctgtggcccttcatccagaatctttcttcagcagactttac
aaaacgcctcttgagactatggagcaccccgaggatcagtatgtttcagatattttgaac
tatattgatcatggagacccacagattcgaggagctactgctatcctttgtgggaccatt
atctattccattcttaataaatctcgtttcagtgtggaaaattggttagcagttgtcagg
aattcaacaggtaataccttttcactagtagactgcatccctttattgcagaaaactttg
aaagatgagtcttctgttacctgcaagctggcttgcactgctgtgaagcattgtgtcatg
agtttatgcaacagttgctatagtgaattaggattacaattgattattgatgtcttgact
ctgagaaatagttcctactggttggtaagaacagaacttttggaaactcttgcagaaatt
gactttaggttagtgagctttttggaggcaagagcagaccatttacacaagggatctcat
cattatactgggcttttaaaactgcaggatcgagtgctcaataatgttgtcatctattta
cttggagatgaagatccccgggtgaggcatgttgctgcatcttcattaataaggcttgtt
ccaaagttgttttataattgtgaccaaggacagaccgatccagttgtggcagtggcaagg
gatcaaagcagtgtctacctgaaacttctaatgcatgagactcagcctccctctcacttt
tcagtcagcactatcacgagaatatacagaggctacaacttgctaccaaacataactgat
gtgactatggagaataatctttctagagttattgcagcggtttcgcatgccctgacaata
tcaactacacgagcacttacatttggttgttgtgaagctttgtgtcttctttctactgct
tttccagtctgcatttggagtctagggtggcactgtggggttcctgtagcgagtccctca
gatgaatccaggaagagctgtacagttggaatggctacaaccattcttaccctgttgtcc
tcagcctggtttcccctggatctgtcagcacatcaagatgcgatcattttagctgggaat
ttgcttgcagctagtgcccccaaatctttgaaaagtccatggacttcagaagatgaaacc
agtccaggagctatgaaacaagaagagccatggccagctttgggagatagaacattggtt
acaatggtagagcagctcttttctcatttgctgaaagccattaacatctgtgcccatgtt
ttggatgatgttactcctgggccagcaataaaggcagccttaccttctctaaccaaccca
ccttctttaagtccaatccgtcggaaaggaaaagaaaaagaatcaggagagcagacatct
gtaccattgagtcccaaaaaaggcaatgaagctagtccagcttctaggtcttctgatccc
tctggatctgccataacaagtaaatcatcatcattgggaagtttctatcatcttccttct
tatctcaagttatatgatgttctaaaagctacacatgctaattataaggttacattggat
cttcagaatagcaatgaaaagtttggggggtttcttcgggctgccttggatgtcctttca
cagattcttgaactagcaaccctgcaggatatcggcaagtgtgttgaagaaatcttggga
tacctgaaatcctgtttcaatcgagaacctacaatggctactgtttgtgttcaacagttg
ttgaagactctgtttgggacaaatctggcatcacagtatgatggcttatcatccaaaccc
agcaaatctcaaggaaaagcccagcgtttgggttcttctagtttgcgtcctggcctttat
cattattgcttcatggcaccatatacacattttacacaggctttggctgatgctagtttg
aggaatatggtccaggcagaacaagaacatgatacttctgggtggtttgatgtgctccag
aaagtgtctacgcagttgaaaaccaatcttacaaatgtaacaaaacaccgtgcagataag
aatgctattcacaatcatattcgtttgtttgagcctcttgtcatcaaggctttaaaacag
tacaccacaacaacatctgtgcaattgcagagacaggttctagatttactggcgcaactg
gttcaattacgagttaattactgtcttctggattctgatcaggtgtttattggatttgtg
ttaaagcagtttgaatacattgaagttggccagtttagggaatcagaagcaattattccg
aacatctttttcttcttagtattgttgtcttatgagcgctatcactcaaagcagatcatt
ggaattcctaaaatcattcaactttgtgatggcatcatggccagtgggcgaaaagctgta
acacacgccataccagctctgcagcccatagttcatgatctctttgtattaagaggaaca
aacaaagcagatgctggaaaagaactcgagacacaaaaagaggtggctgtgtccatgttg
ttaagacttattcagtaccatcaggtattagagatgttcatcctagtcctacagcagtgt
cacaaggagaatgaagacaaatggaagagattatctcgacaaatagctgacatcattctc
ccaatgttagcaaaacaacagatgcatattgattctcatgaagcccttggagtattgaac
actttatttgaaatattagctccttcatccctccgtcctgttgacatgcttttacgaagt
atgtttattactcccaatacaatggcatcagtgagtactgttcaattgtggatatcaggc
atcttagctattctgagagtacttatatcccagtcaactgaagacattgttctttcccgg
attcaggaactctctttttctccttatttaatctcatgtcaagtaattaaaaaattaaga
gatggaggtagtagcttgccatcaccagaagatcaaagtgaaatgaaacaaatgaaatgt
ttgccagaagaaacgttttctagattcctgttacagctggtgggcattcttttggaggat
attgtcacaaagcagcttaaagtggagatgaccgagcaacaacacacgttctattgccaa
gaactgggcaccctgctgatgtgcctgatacacatcttcaagtcaggaatgttcaggaga
atcactgcagctgcaactagactctttacaggagatggttctgatggcagtttttatacc
ttagaaagcctgagtgaactggtccggtctatgattcctacacatccttctttagtgctc
ctgtggtgtcagattctcctccttgtcaactataccaactataactggtggtccgaagtg
catcagacaccaaaaaggcacagtctttccagtacgaagctcctcagtcctcagatgtct
agcgatggtgaggattcccacatggcatctacacttggagtgtgcaatagagagatagta
cgaagaggcgcactcattcttttctgtgattatgtttgtcagaacctttatgattcagaa
catttaacttggcttattgtgaatcatattcaagatttgatcagtctctcgcatgagcct
ccagtccaagactttattagtgcagtccacaggaattcagctgctagtggacttttcatc
caggctattcagtctcgctgtgaaaacctttcatctccaacaacgctgaagaagaccctg
cagtgcttagagggcattcatctcagccagtcgggggctgtgctcatgttgtatgtggac
aagcttttgtgtacaccattccgcgtgctggctcgaatggttgacacacttgcttgtcgg
cgagtagaaatgcttttggctgccaatttacagaacagcatgtcacagttacctgtggaa
gagctgaatagaattcaagagtatcttcaaaaaagtggattagctcagagacatcaaaga
ctctattccctgctggacaggtttcgtcgtacagtagcaccagagacagctagcccttct
cctgtagtcacttcacaccccctggatggggaaaatcatttgtcactagagatgataaat
ccagaccaagactggtatgtatctctggttaaatctcagtgttgcactaagtcagactca
gcactgctagaaggtgcagagctggtaaataggattcctccagatgaactggcccccttc
atgatgagtaaggagttcaacttatccctcttagctccttgtttaagtcttggcatccgt
gagatctccagcggtcagagtagcagcctctttgagacagcccggtcagtgaccctggac
cgtgtggccagcctggtgcaggagcttccacccaaccatcatgtttttcagcctctttta
cccatcgagacttcagcctactggaatcaactaagcgatttctttggaaatgctgtgatt
taccactcaattactacactggcctgtgcccttgctcagtacttagtactcttttctaag
ttaccaactcatcttcaacttccccctgaaaaagagagtgatgttctgaaatttgtcgtt
gtggcgcttgaggccctatcctggcacttaatacatgagcagatgccattaagtatggat
ctacaggcagttctggattgttgctgtctaactttgcatctacctggtctttggaatatg
ttgtcatcagtagagtatgtcacccacgtgtgttccctaattcactgtgttcgttttatt
ttagaagcaattgcagttcaacctggagaccaacttcttagtccagaaagaaggaagaat
acttcaagaggaatcagtgaagatgaagttgattcaaatgtgcaggttcccaagtatatt
accactgcttgtgaaatgatcgcggaaatggtggcagcattacagactgtgttggctttg
ggtcacaagaggaatagtggaattccagctttccttactcctgtactgaaaaacattatc
atcagccttgctaggctgccactggtcaatagctatactagagtgcctcccttggtatgg
aaattaggatggtcacctaaacccggaggagattttggcacaacacttcctgaaatacct
gtagaatttcttcaagaaaaggagatctttaaagagttcatctatcgtattaatacctta
ggttggacaagtcgtacgcaatttgaagaaacctgggctactctccttggtgtccttgta
actcagcctattgtgatggatcaggaagaaagtcaacaggaagaagatactgagaggacc
cagatcaatgttcttgcagttcaagctatcacatccttggtgctgagtgcaatgaccctt
cctgtcgcaggcaatccagctgtgagctgcttggagcaacagccccggaacaaagccctt
aaagccctggatacaaggtttgggaggaaactgagtgttattaggggaattgttgaacaa
gaaattcaagcaatggtttcaaagagagacaacattcccacacatcacttgtaccaggct
tgggatcctgtcccatctctatctccagctatgtcaggtacccttatcagccatgaaaaa
cttctgctgcagatcaacactgaacgagaaatggggaacatgagttataatctaggacag
gtctctatacactctgtgtggctgggaaataatatcaccccattgagagaagaagaatgg
gatgaagatgaagaagatgagagtgatcttcctgccccttcttcacccccaacatctcca
ataaactccaggaaacaccgggctggagttgatatacattcatgttcgcagtttttgctt
gaattatacagtcagtggatactcccatcaagttcagccaaaagaaccccagtcattttg
atcagtgaagtagtgagatctcttctggcagtctcagacttgtttacggagaggaatcaa
tttgaaatgatgtacctgacattgacggagcttcgaagggtgcatccttctgaagatgaa
atcctccttcagtatttagtaccagctacttgtaaagcagctgctgttctgggcatggat
aaagctgtggcggagccagtgagcagactgttggagaccacactccgaagcacccatttg
ccaagcaagattggagcactgcatggcattctctatgtgctcgaatgtgacttacttgat
gaaacggctaagcagctcattccaattatcagtgattacctcctttctaatctgagagga
attgctcattgtgtgaatctgcatagccagcagcatgtcctggtgacctgtgctgctgcc
ttctaccttatggagaattatcccctggatgtaggcccagagttttctgctgcagtgata
cagatgtgtggggtaatgctctctgccagtgaagaatccactccagccattatttatcac
tgtgtcctgagaggtttggaacgacttcttctttcagagcagctctccaggctggatgga
gaatccttagttaaactcagcgttgaccgagtgaatgtgcacagtcctcaccgagctatg
gcagccctgggcttgatgttaacttgcatgtacacagggaaggagaaaataagccctggc
agaacctcagatcccaacgccactgccccagacagtgagtcggttattgttgcaatggag
cgggtatctgttctctttgataggatcaggaaaggatttccttgtgaagccagagtggtg
gcacggatcctgcctcagtttctagatgattttttccctccccaggatgtaatgaataaa
gttattggagaatttctgtcaaaccagcagccatacccacaattcatggcaactgttgta
tataaggtgtttcagacgttgcataccacaggacaatcatctatggtccgagactgggtg
atgctctccctctcaaacttcactcagaggaccccagtggcaatggctatgtggagtctc
tcctgctttttcgtcagtgcttccactagtcagtgggtctcagcaatccttccgcacatc
atcagcaggatggggaagtcggaacaagtggacattaatcttttctgtctggtggccata
gacttttacagacatcaaatagatgaggagctggatcgcagggcctttcagtctgtgttt
gaggtggtagcatctccaggaaatccctaccatcgactgctgacttgtttgcaaaatgtc
cacaagattgcaacatgttga
DBGET
integrated database retrieval system
