Sarcophilus harrisii (Tasmanian devil): 100930896
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Entry
100930896 CDS
T02286
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03013
Nucleocytoplasmic transport
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100930896 (UPF2)
03015 mRNA surveillance pathway
100930896 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100930896 (UPF2)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100930896 (UPF2)
mRNA cycle factors
P-body specific factors
100930896 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100930896
NCBI-ProteinID:
XP_031794437
UniProt:
A0A7N4PLZ8
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All DBs
Position
5:complement(130281566..130463029)
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AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKESLLNNKEKECSERRSVNSREKTKDDVKLTTKRDVVKVPEDKKKKL
EEDKRKKEDKERKKKEEEKIKAEEELKRREEEEKKKLEEEERKKQEEREKRQQEEAAAQL
KEKEESHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKGAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNERTYQSKDSNKEDSKESKEPKDNKDVSNTDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDPEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NSDGTPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKNLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLMNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDDGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGETEAGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaaatatggaagaaaaagaatctttattaaataac
aaagaaaaagagtgcagtgaaaggagatcagtaaatagcagggaaaaaacaaaagatgat
gtcaaacttaccactaagagagatgtagttaaagtgcctgaggataagaaaaaaaagttg
gaggaagacaaacgaaaaaaagaggacaaggagcgaaagaaaaaagaggaagagaagata
aaagctgaggaagaattaaagagacgagaagaggaagaaaagaagaagcttgaagaggaa
gagagaaagaagcaagaagagcgggagaaacgtcagcaagaagaagcagctgcccaactg
aaagagaaagaagaatcccatcaactacatcaggaagcatgggaacgacatcaagcaagg
aaggaactccgaagcaaaaaccaaaatgcaccagacaaccgaccagaggagaatttcttt
agcagattggactcaagtttgaagaaaaatacagcttttgtcaagaaattgaaaactatt
acagagcaacagagagactccttgtcccatgattttaatggcctcaatttaagcaaatac
attgcagaagctgttgcttctattgtggaagctaaactaaaaatttctgatgtgaactgt
gctgtgcacttgtgctctctctttcaccagcgctatgctgacttcgccccatctctgctt
caggtttggaaaaaacattttgaagcaagaaaagaggagaaaactcctaacattaccaaa
ctaagaactgacttgcgtttcattgcagaattgaccatagtggggattttcactgacaaa
gaaggtctgtccttaatctatgaacaactgaaaaacattattaatgctgaccgtgaatcc
cacactcatgtgtctgtggtgattagcttttgtcggcattgtggggatgatattgctgga
ttggtaccaaggaaagtgaaaggtgctgcagagaagtttaatttgagttttcctcctagt
gaaataatcagtccagagaagcaacagcctttccagaacctgttaaaagaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacagaatattgagagacaaaac
agacgtattctacattctaaaggggagctgagtgaagatagacataagcagtatgaagaa
tttgctatgtcttatcagaaattactggcaaattctcagtctttagcagaccttttggat
gaaaatatgcctgatcttcctcaggacaaaccaacaccagaggagcatggccctggaatt
gatatctttacacctggtaaacctggagagtatgacttagaaggtggtatatgggaggat
gaagatgctcgaaatttttatgagaaccttattgatttgaaggcttttgttccagccatt
ttgtttaaagataatgaaagaacatatcagagcaaagactctaataaggaagattccaaa
gagtcaaaggaacctaaggataataaagatgtgtcaaatacagatgatttggaacttgag
ttggagaacctggaaattaatgatgatactttggaattagagggtggtgatgaagcagaa
gaccttacaaagaaacttcttgatgaacaagaacaagaagatgaggaagccagtactggg
tctcatctaaagctcatagtagatgctttcctgcaacagttgccgaattgtgtcaatcga
gatctcatagacaaggcagcaatggatttttgcatgaatatgaacacaaaagcaaataga
aggaaactggttcgagcactcttcatagttcctagacaaagattggatttattaccattt
tatgcaagattggttgctacattacatccttgcatgtcagatgttgcggaggatctttgt
tcgatgctgaagggagatttcagatttcatgtacgaaaaaaagatcaaatcaatattgaa
acaaaaaacaaaactgttcgatttattggagagcttaccaagttcaaaatgttcactaaa
aatgatactctacattgtttaaagatgcttctatcagacttttcccaccaccatattgaa
atggcatgtaccctgttggaaacttgtggaaggtttcttttcagatctccagaatctcat
ctgagaaccagtgttcttttggaacaaatgatgagaaagaaacaagcaatgcatcttgat
gcaagatatgtcacaatggttgagaatgcatattattattgcaatccccctccagcagaa
aaaacagtgaagaagaagcgtccgcctctccaggaatatatccgtaagcttctttacaag
gacctctccaaagttactactgagaaggtactaagacagatgcgaaagctgccctggcaa
gatccagaagtgaaagactatgttatttgttgtatgataaacatctggaatgtgaaatat
aatagtattcattgtgtagccaacctcttagcaggattagtactttaccaggaagatgtt
ggaattcatgttgtggatggagtattagaagatattcgactaggaatggaggtaaaccag
cctaaatttaaccagagacggatcagcagtgccaagttcttaggggaactttataattat
cgcatggtggaatcagcagttatttttagaactctctattcttttacatcatttggtgtt
aattctgatggtactccaagtccattggatcctcctgaacatctcttcagaattaggcta
gtatgcactattctggatacctgtggtcagtactttgacagaggctccagcaaacgaaag
cttgattgtttcctcgtttattttcagcgatatgtttggtggaagaaaaatttggaggtt
tggacaaaagaccatccttttcctattgacatagattatatgatcagtgatacattagaa
ctgttgagaccaaagatcaaactttgtaattctctggaagagtccatcagacaagtacaa
gacttggaacgagaattcttaataaaattaggtcttatgaatgacaaagattcaaaagat
tccatgacagaaggagaaaaccttgaagaagatgaagaggaggaagaaggaggagctgag
acagaagaacaatctggaaatgaaagtgaagtaaatgaacctgaggaagaggagggttct
gacaatgatgatgatgatggagaggaagaagaggaggagaatacagattaccttacagat
tccaataaggaaaatgaaactgatgaagagaacactgaggtaatgattaaaggaggtgga
cttaaacatgtcccatgcgcagaggatgaagacttcattcaggctctagataaaatgatg
ctggaaaatcttcagcaacgaagtggtgagtctgttaaagtacaccagctagatgtcgct
attccgctgcacctcaaaagccaactaaggaagggcccaccgctgggtggtggggaagga
gagactgaggctggcgacacgatgccatttgtcatgttaactagaaaaggcaacaagcag
cagtttaagatccttaatgtaccaatgtcttcccaacttgctgcaaatcattggaaccaa
caacaggcagagcaagaggaaagaatgagaatgaaaaaactcacactggatatcaacgaa
cgtcaggaacaagaagattatcaagagatgttgcagtctcttgcacaacgtccagctcca
gcaaacaccaatcgtgagcgacggccccgttaccagcatcctaagggagcacctaatgca
gatctaatctttaagactggtgggaggagacgttga
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