Sarcophilus harrisii (Tasmanian devil): 100932975
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Entry
100932975 CDS
T02286
Symbol
VIM
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820
Cytoskeleton in muscle cells
shr05169
Epstein-Barr virus infection
shr05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100932975 (VIM)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100932975 (VIM)
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
100932975 (VIM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100932975 (VIM)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
shr04812
]
100932975 (VIM)
04147 Exosome [BR:
shr04147
]
100932975 (VIM)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
100932975 (VIM)
Cytoskeleton proteins [BR:
shr04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
100932975 (VIM)
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100932975 (VIM)
Exosomal proteins of other cancer cells
100932975 (VIM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
TolA_bind_tri
TPR_MLP1_2
DUF7491
Sec10_N
RBD-FIP
Laminin_II
CENP-F_leu_zip
DUF4515
Motif
Other DBs
NCBI-GeneID:
100932975
NCBI-ProteinID:
XP_031795771
Ensembl:
ENSSHAG00000014763
UniProt:
A0A7N4Q188
LinkDB
All DBs
Position
5:complement(237009796..237020332)
Genome browser
AA seq
467 aa
AA seq
DB search
MSTRSVSSSSYRRMFGGSSAGGRPSSSRSYVTSTTRYSLGSAIRPSTTRSVYSSSPGGAY
ATRSSSVRLRSSAPIPGVRLLQDSVDFSLADAINTEFRNTRTNEKVELQELNDRFANYID
KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA
EDIMRLREKLQEEMMQREEAETTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE
EEIQELQAQIQEQHVQIEVDVAKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLS
EAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQ
DTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFS
SLNLRETNLESHPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccggtcggtctcctcgtcctcttaccgcaggatgttcggcggcagcagcgcg
ggcgggcggcccagctccagccgcagctacgtgacctcgaccacccgctacagcctgggc
agcgccatccggcccagcaccacccgcagcgtgtactcgtcgtccccgggcggcgcgtat
gccacgcgctcgtcctcggtgcgcctgcggagcagcgccccgatccccggggtgaggctg
ctgcaggactcggtggacttctccctggccgacgccatcaacacggagttcaggaacacc
cgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgac
aaggtgcgctttctggagcagcagaacaagatcttgctggccgagctggagcagctcaag
ggccagggcaagtcgcgcctgggggacctgtacgaggaggagatgcgggagctgcgccgg
caggtggaccagctcaccaacgacaaggcccgggtggaggtggagcgggacaacctggcg
gaggacatcatgcggctccgcgagaagttgcaagaggagatgatgcagagggaggaagcc
gagaccaccttgcagtctttcagacaggatgttgacaacgcttccttagcgcgtctggac
ctggagcgtaaagttgaatctctgcaagaagagattgctttcttgaagaaacttcacgaa
gaggaaattcaagaactgcaggcccagattcaagaacaacatgttcagatcgaagtggat
gttgccaagcccgacctcaccgcagccctgcgtgacgtccgtcagcagtacgaaagcgtg
gctgctaagaacctccaggaggctgaggaatggtacaagtccaaatttgccgatctctct
gaagctgctaataggaacaatgatgccctgcgccaggctaagcaagaatccaatgaatac
cgaagacaggtgcagtccctcacctgcgaagtggatgcacttaaaggaactaatgagtcc
ctggaacgccagatgcgtgaaatggaggagaactttgccgttgaagctgctaactaccaa
gacactattggccgcctgcaggatgaaatccagaacatgaaagaagaaatggcccgtcac
cttcgtgaataccaggacctcctgaatgtcaagatggctcttgacattgagattgctacc
tacaggaaactgctggagggagaagagagcagaattgctctgcctcttccaaatttttct
tccctgaatctgagggaaaccaacctggagtcacaccctatggttgacacccattcaaag
agaacactcctgattaagactgtagaaactagagatggacaggtcatcaatgaaacttct
caacaccatgatgatctggaatga
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