KEGG   Sarcophilus harrisii (Tasmanian devil): 100932975
Entry
100932975         CDS       T02286                                 
Symbol
VIM
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04820  Cytoskeleton in muscle cells
shr05169  Epstein-Barr virus infection
shr05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:shr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100932975 (VIM)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100932975 (VIM)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    100932975 (VIM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shr03019]
    100932975 (VIM)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:shr04812]
    100932975 (VIM)
   04147 Exosome [BR:shr04147]
    100932975 (VIM)
Messenger RNA biogenesis [BR:shr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     100932975 (VIM)
Cytoskeleton proteins [BR:shr04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     100932975 (VIM)
Exosome [BR:shr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100932975 (VIM)
  Exosomal proteins of other cancer cells
   100932975 (VIM)
SSDB
Motif
Pfam: Filament Filament_head DUF1664 TolA_bind_tri TPR_MLP1_2 DUF7491 Sec10_N RBD-FIP Laminin_II CENP-F_leu_zip DUF4515
Other DBs
NCBI-GeneID: 100932975
NCBI-ProteinID: XP_031795771
Ensembl: ENSSHAG00000014763
UniProt: A0A7N4Q188
LinkDB
Position
5:complement(237009796..237020332)
AA seq 467 aa
MSTRSVSSSSYRRMFGGSSAGGRPSSSRSYVTSTTRYSLGSAIRPSTTRSVYSSSPGGAY
ATRSSSVRLRSSAPIPGVRLLQDSVDFSLADAINTEFRNTRTNEKVELQELNDRFANYID
KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA
EDIMRLREKLQEEMMQREEAETTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE
EEIQELQAQIQEQHVQIEVDVAKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLS
EAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQ
DTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFS
SLNLRETNLESHPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgtccacccggtcggtctcctcgtcctcttaccgcaggatgttcggcggcagcagcgcg
ggcgggcggcccagctccagccgcagctacgtgacctcgaccacccgctacagcctgggc
agcgccatccggcccagcaccacccgcagcgtgtactcgtcgtccccgggcggcgcgtat
gccacgcgctcgtcctcggtgcgcctgcggagcagcgccccgatccccggggtgaggctg
ctgcaggactcggtggacttctccctggccgacgccatcaacacggagttcaggaacacc
cgcaccaacgagaaggtggagctgcaggagctcaatgaccgcttcgccaactacatcgac
aaggtgcgctttctggagcagcagaacaagatcttgctggccgagctggagcagctcaag
ggccagggcaagtcgcgcctgggggacctgtacgaggaggagatgcgggagctgcgccgg
caggtggaccagctcaccaacgacaaggcccgggtggaggtggagcgggacaacctggcg
gaggacatcatgcggctccgcgagaagttgcaagaggagatgatgcagagggaggaagcc
gagaccaccttgcagtctttcagacaggatgttgacaacgcttccttagcgcgtctggac
ctggagcgtaaagttgaatctctgcaagaagagattgctttcttgaagaaacttcacgaa
gaggaaattcaagaactgcaggcccagattcaagaacaacatgttcagatcgaagtggat
gttgccaagcccgacctcaccgcagccctgcgtgacgtccgtcagcagtacgaaagcgtg
gctgctaagaacctccaggaggctgaggaatggtacaagtccaaatttgccgatctctct
gaagctgctaataggaacaatgatgccctgcgccaggctaagcaagaatccaatgaatac
cgaagacaggtgcagtccctcacctgcgaagtggatgcacttaaaggaactaatgagtcc
ctggaacgccagatgcgtgaaatggaggagaactttgccgttgaagctgctaactaccaa
gacactattggccgcctgcaggatgaaatccagaacatgaaagaagaaatggcccgtcac
cttcgtgaataccaggacctcctgaatgtcaagatggctcttgacattgagattgctacc
tacaggaaactgctggagggagaagagagcagaattgctctgcctcttccaaatttttct
tccctgaatctgagggaaaccaacctggagtcacaccctatggttgacacccattcaaag
agaacactcctgattaagactgtagaaactagagatggacaggtcatcaatgaaacttct
caacaccatgatgatctggaatga

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