Sarcophilus harrisii (Tasmanian devil): 100933306
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Entry
100933306 CDS
T02286
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100933306 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
100933306 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100933306 (PABPC4)
03041 Spliceosome [BR:
shr03041
]
100933306 (PABPC4)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100933306 (PABPC4)
mRNA cycle factors
Stress granule specific factors
100933306 (PABPC4)
Spliceosome [BR:
shr03041
]
Complex C
Other components
Complex C specific factors
100933306 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RBD_DEAH11
RRM_10
RBD_RDR6
RRM_3
TEX47
POP1_C
Motif
Other DBs
NCBI-GeneID:
100933306
NCBI-ProteinID:
XP_003765434
Ensembl:
ENSSHAG00000018139
UniProt:
A0A7N4PXU5
LinkDB
All DBs
Position
3:complement(544707927..544724403)
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AA seq
630 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPTPGGYFMPAVPQAQNRP
PYYAPNQIAQMRPNPRWQQGGRPQGFQGVPNAIRQSGPRPTLRHLTPASNTQASRGLPTT
PQRVGVPTAVQNLSPRPSVATPAPRAVPPYKYAANVRSPHPAIQPLQTPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHHAKKEAAQKVAVVAATS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcggccagcagttaccccatggcctccctgtacgtgggtgacctgcactcg
gatgtcaccgaagccatgctgtacgagaagttcagccccgccggacccgtgctgtccatc
cgggtctgcagggacatgatcaccaggcgctcgctaggctatgcctatgtcaacttccag
cagccggcggacgctgaacgtgccctggataccatgaactttgatgtaattaaaggcaaa
cccatccgtatcatgtggtctcagcgagatccctctttgaggaaatcgggtgttgggaat
gttttcattaaaaatctggataaatccatagacaacaaggcactttatgacaccttttca
gcatttggcaacatattgtcctgcaaggtggtgtgtgatgagaatggttctaaaggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgcttctcaacgaccgaaaagtgtttgttggtagattcaagtcaaggaaagaacgggaa
gcagaattgggtgccaaagctaaggaattcactaacgtatatatcaaaaactttggcgat
gacatggatgatgaaagactgaaggaacttttcagcaaatacggtaaaactctgagtgta
aaggtgatgactgactctagtggaaaatccaaaggttttggttttgtgagttttgagaaa
catgaggatgctaataaggcagttgaagaaatgaatggaaaagacatcaatgggaaaatg
gtatttgtaggccgggcacagaaaaaagttgagcgccaggctgaattaaaacggaaattt
gagcagttaaagcaggagagaattagccgctaccagggggtgaatctctatattaagaac
ctggatgacaccattgatgatgaaaaattaaggaaagaattttcaccttttggatcaatt
accagtgccaaggtgatgttggaggatgggcgaagcaaaggcttcggctttgtctgcttc
tcttctcctgatgaggcaaccaaagccgtgacagagatgaacgggcgcatcgtgggctcc
aagcccctgtatgttgctctagcgcagaggaaagaggagagaaaagctcacctgaccaac
cagtacatgcagcgcattgcaggaatgagggcccttcctgccaacacgatcattaaccag
ttccagcccactcctggaggatacttcatgcccgcagtgccccaggctcagaatagacct
ccttattacgctcccaatcaaatagcccagatgagacctaatccacgatggcaacaaggt
gggagacctcaaggcttccaaggagtgccaaatgccattcgccagtctgggccacgccca
actcttcgccacctcactccagccagtaatacccaggcttctcgaggtctcccaactact
cctcagcgagttggggtgcccactgctgtgcagaatttatctcctagaccctctgtagct
acccctgcacctagggctgttcctccttacaaatatgctgcaaatgtccgaagcccccat
ccagctatccagcctctgcagacacctcagccagcagtccacgtgcaaggccaggagccc
ctgacagcttccatgctggccgctgctcctcctcaggaacagaagcagatgctaggagag
cgtttgttcccattgattcaaaccatgcacaataatttagcggggaagattacaggtatg
ctgctagagattgataattctgaactgctgcacatgctggagtctccagaatccctccgg
tcaaaggtagaggaagccgttgcagtattacaagctcatcatgccaagaaggaagctgct
cagaaggtggctgtggttgctgctacctcttaa
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