Sarcophilus harrisii (Tasmanian devil): 100933417
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Entry
100933417 CDS
T02286
Symbol
COL6A2
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
shr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100933417 (COL6A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100933417 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100933417 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100933417 (COL6A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100933417 (COL6A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100933417 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shr04147
]
100933417 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
100933417 (COL6A2)
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100933417 (COL6A2)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100933417 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
100933417 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
100933417
NCBI-ProteinID:
XP_031824640
LinkDB
All DBs
Position
4:complement(463203274..463232754)
Genome browser
AA seq
1100 aa
AA seq
DB search
MFQKLFPALLVWGLLGSLHAQQQSAFFEGGPADRVSSCLEETDCPIKCPCGTSGGPCSAH
RTCXQTRSCQFTSELKNLKYQGQVAISWHYGGLHFSDEVEIFSPLGSDEATFKSKLQKIR
SFRRGTFTDCAISNMTQEITRNPSKGINFAIVITDGHVTGSPCGGIKLQAERARDAGIKL
FAVALNQNKNEHGLREIANLPHELYRNNYLTIREDSSIDQDTIDRIIQVMKHEAYSECYK
VSCLQIPGPAGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGPKGVPGLKGE
KVSCLWAVTGGAPFQAEPPSAGEPFPSDRDTWGKGPGSGDEDLAVGAQDLASRAPIITQV
PGVGQFSPGHPPLGGAWGKRGRIGPPGCKGDPGDRGLDGYPGEAGSPGEPGDQGSKGDSG
RPGRRGPPGPDGEKGSKGYQGNNGAPGSPGVKGAKGGPGPRGPRGEQGRRGDPGAKGGPG
DDGPKGEKVSELGHGGKVRARERSLRSPPIPPPRASAKPFGILMAGPSPPQFPSLISTRD
TSLSAQGDRGMPGPRGPQGSPGEPGKQGSRGDPGDVGPRGDSGPPGPKGDGGTPAGLGPQ
GEPGEKGEPGPPGPEGPRGDFGIKGAPGKKGEKGEPADPGPPGEPGPRGPKGAPGPEGEP
GPPGDPGLTECDVMTYVRETCGCCDCVKHCGALDIIFVIDSSESIGYTNFSLEKNFVINV
VNRLGSITKDPNSDTGTRIGVVQYSHDGTFEAIKLDDERITTLSQFKEEVKKLEWIAGGT
WTPSALNYTYNELIKGGRRKKTKVFAVVITDGRHDPRDDEQSLTALCNTVENVVVTAIGI
GDMFNEHHESESLRSIACNQKGQVRNMTLFSDLVAEKFIDEMETFLCPDPQIVCPDLPCQ
TELYVAQCTQRPVDIVFLLDGSERIGERNFHKAHRFVEEVARRLTLARRHNDPLNARVAL
LQYGNEREQEVVFPLTSNLTAIQGALSRIRYLNSFSHVGTGIIHAINNIVMDPQAGARRN
AELSFVFITDGVTGELSLNESLHSMRKQDVVPTVLALGGDVDMDLLLKISLGDRAAIFQE
KDYDSLSQPSFFDRFIRWIC
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaagctcttccccgcgctcctggtctggggcctcctgggctccctccatgct
cagcagcagtcagcattctttgagggcggccccgcggacagagtcagcagctgcctagag
gagacagactgccccatcaaatgtccctgtggaacctcgggcggaccatgcagtgcccat
cgaacctgctagcagacgcgttcctgtcagttcaccagcgaactgaagaacctcaagtac
cagggccaggtggccatcagctggcactacgggggcctgcacttctccgacgaggtggag
atcttcagcccgctgggcagcgatgaggccaccttcaagtccaagctacagaagatccgc
tccttccgccgcgggaccttcaccgactgtgccatctccaacatgacccaggagatcacc
aggaaccccagcaagggcatcaacttcgccattgtgatcaccgacgggcacgtcaccggc
agtccctgcggcgggatcaagctgcaggccgagagggcgcgtgacgcgggcatcaagctc
ttcgcggtggccctcaaccagaacaagaacgagcacgggctccgggagatcgccaacctg
ccgcacgagctctaccgcaacaactacctcaccatcagggaggactcctccatcgaccaa
gacactatcgacaggatcatccaggtcatgaaacacgaagcatattctgagtgctacaag
gtgagctgcctgcagatcccgggccccgccggccccaagggctaccgcggacagaaggga
gccaaggggaacatgggcgagccgggcgagcctgggcagaaagggcgacagggagacccc
ggcatcgagggccccatcggcttcccaggccccaagggcgtccctggtttgaagggcgag
aaggtaagctgcctctgggctgtcactgggggggctccttttcaggcagagcctcctagt
gcgggggagccctttccttcagatagggacacttgggggaagggacctggctctggagac
gaggacctggccgtgggggcgcaggacctggcttcaagagcccccattatcacccaggtg
ccaggagttggtcagttctctcctggacacccgcctctgggtggggcgtggggaaagcgg
ggacgcatcggcccccccggctgcaagggggaccccggtgacaggggcctggacggttac
ccaggggaggccgggagcccaggagaaccaggcgaccagggcagcaagggagattcgggc
cgcccgggccgccgcggccccccaggaccagatggagagaaagggagcaagggttaccaa
ggcaacaacggagcccctggaagtccgggtgtgaagggagccaaaggggggccaggaccc
cgaggacctcgtggagagcagggccgtagaggagatcccggggccaaaggcggcccagga
gatgacgggccaaagggagaaaaggtgagtgagcttgggcacggagggaaggtcagggcc
agagagcggagcctcaggagccccccgattccccctccaagagcctcggccaagcccttt
gggattctcatggctggcccttcccctcctcagtttcccagtctgatcagcaccagggac
acttccctttctgcacagggagaccgaggcatgccgggacccagaggaccccagggcagc
cccggagagcccgggaagcagggatcccgtggggacccaggggatgtcggtcccagagga
gactcggggcctcccggacccaagggagacgggggaactccagctggtctgggacctcag
ggagagccgggagaaaaaggcgagcccggcccccccggcccggagggcccacgaggcgac
ttcggcatcaaaggagctcccgggaagaaaggagagaaaggagagcctgcggatcctggt
ccccccggagagcctggccccagaggccccaaaggagcccccggcccagagggtgaacct
ggcccccctggagaccccggcctgacggagtgtgacgtcatgacctacgtgagggagacc
tgcggctgctgcgactgcgtgaagcactgcggagccctggacatcatctttgtcatcgac
agctcggagagcatcggctacaccaacttctcgctggagaagaactttgtcatcaacgtg
gtcaacaggctgggctccatcaccaaggaccccaactctgacacagggacacgcatcggg
gtggtccagtacagccatgacggcaccttcgaggccatcaagctggacgacgagcgcatc
accaccctgtcccagttcaaggaggaggtgaagaagctggagtggatcgcggggggcacg
tggacgccctcggccctgaactacacctacaacgagctcatcaagggcggccggcgcaag
aagaccaaggtgttcgcggtggtcatcacggacgggcgccacgacccccgcgacgacgag
cagtcgctgaccgcgctgtgcaacacggtggagaacgtggtggtcaccgccatcggcatt
ggggacatgttcaacgagcatcacgagagcgagagcctccgctccatcgcctgcaaccag
aagggccaagtgcgcaacatgacgctcttctccgacctggtggccgagaagttcatagac
gagatggagaccttcctgtgcccagatcctcagatcgtctgccctgatctcccctgccag
acagaactgtacgtagcccagtgcacgcagcggcccgtggacatcgtcttcctgctggac
ggctccgagcgcatcggcgagcgcaacttccacaaggcgcaccgcttcgtggaggaggtg
gcgcggcggctgacgctggcccggcggcacaacgacccgctgaacgcgcgggtggccctg
ctgcagtacggcaacgagcgcgagcaggaggtggtcttcccgctcacctccaacctgacg
gccatccagggcgcgctgagccgcatccgctacctcaactccttctcgcacgtgggcacg
ggcatcatccacgccatcaacaacatcgtcatggacccgcaggccggggcgcgccgcaac
gccgagctctccttcgtcttcatcacggacggcgtcacgggcgagctgagcctcaacgag
tccctgcactccatgcgcaagcaggacgtggtgcccaccgtgctggcgctgggcggcgac
gtcgacatggacctcctgctgaagatcagcctgggggatcgcgccgccatcttccaggag
aaggactacgacagcctctcccagcccagcttcttcgacaggttcatccgctggatctgc
tag
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