Sarcophilus harrisii (Tasmanian devil): 100934235
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Entry
100934235 CDS
T02286
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100934235 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100934235 (MTREX)
03041 Spliceosome [BR:
shr03041
]
100934235 (MTREX)
03009 Ribosome biogenesis [BR:
shr03009
]
100934235 (MTREX)
03016 Transfer RNA biogenesis [BR:
shr03016
]
100934235 (MTREX)
Enzymes [BR:
shr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100934235 (MTREX)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100934235 (MTREX)
Spliceosome [BR:
shr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100934235 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
100934235 (MTREX)
Ribosome biogenesis [BR:
shr03009
]
Eukaryotic type
Pre-60S particles
Helicases
100934235 (MTREX)
Transfer RNA biogenesis [BR:
shr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100934235 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
100934235
NCBI-ProteinID:
XP_012396484
Ensembl:
ENSSHAG00000004600
UniProt:
G3VQ03
LinkDB
All DBs
Position
1:144343434..144429827
Genome browser
AA seq
1033 aa
AA seq
DB search
MADAFGDELFSVFEDETPAPGAKKGKGAAEAAGKAKKRTDDKPQSGSTNVGKNKRDLELE
STDEPIFGKKPRVENTLSEDVSLADLMPRVKVEAVETVEGCTHEVALPADEEYVPLKPRD
GKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTS
PIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWV
IFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYT
DYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTK
GPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTAEEKKMVEEVFNNAID
CLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGI
NMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVILMVDEKMSPTVGK
QLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKKLE
AQYNAIAIPNEESVVIYYKIRQQLAKLAKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDF
GWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPGEKGEMQVV
PVLVHLLSAISSVRLYIPRDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQG
LKKVIQKVEAFEHRMYSHPLHNDSNLETVYKLCERKAQIAVDIKSAKRELKKARTVLQMD
ELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALL
SCFVFQENSTELPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNTFKSNLMDV
VYTWATGCTFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITK
IKRDIVFAASLYL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggacgagctcttcagcgtgttcgaagacgagacaccggctccc
ggggctaagaaagggaaaggggcagccgaggccgctggcaaggccaaaaaacggacagat
gataaaccacagtcaggatccaccaatgttgggaaaaacaaaagagatttagaattggaa
agtacagatgaacccatatttggaaagaagcccagagtagaaaatacattatcagaagat
gtaagtttggcagatctcatgcccagagtcaaagtagaagcagtagaaactgttgaaggc
tgtacacatgaggttgcattacctgcagatgaagaatatgttccactgaagccacgagat
ggaaaagctgccaaagaatatccattcattcttgatgcttttcagagagaagccattcaa
tgtgtagataataaccaatctgttttagtttctgcacatacatcagctggaaaaaccgta
tgtgctgagtatgccattgctttggctttgagagaaaagcagcgtgtgatatttaccagc
ccaattaaggctttaagtaatcagaaataccgtgaaatgtatgaagaatttcaagatgtt
ggcctgatgactggtgatgtcaccataaatcctacagcatcttgcctagttatgactact
gagattttgagaagtatgctgtaccgaggatctgaagttatgagagaagttgcttgggtt
atatttgatgaaattcattatatgagagattcagagcgtggtgtggtatgggaagaaact
attattttgcttcctgataatgttcactatgtcttcctttctgctactattccaaatgct
cgacagttcgcagagtggatttgtcatttacataaacagccttgccatgtaatttacaca
gattatcgaccaactccattgcaacattatatctttccagcagggggagatggccttcat
cttgttgttgatgaaaatggtgatttcagagaagataatttcaataccgcaatgcaagta
cttagagatgcaggagatttggcaaaaggagatcagaaggggaggaaaggaggaacaaaa
ggaccatcaaatgtgtttaaaattgtgaagatgattatggaaagaaactttcagcctgta
attattttcagcttcagtaaaaaagactgtgaagcatatgccctccagatgaccaaatta
gatttcaacacagctgaagaaaagaagatggttgaagaagtatttaataatgcaattgac
tgcttatctgatgaagataaaaagcttcctcaagttgagcatgtgcttcctcttttgaag
agaggaattggtattcaccacggtggcttgcttcctattttgaaagagaccatagaaatt
ctattttcagaaggattgataaaggccttatttgcaacagaaacttttgctatgggaatt
aatatgccggctaggactgtgttgtttacaaatgctcgtaaatttgatgggaaagatttt
cgatggatttcttctggtgaatatattcaaatgtctggtcgagctggaagaagaggtatg
gatgagagaggaatagtaattctcatggtggatgaaaaaatgagcccaactgtaggaaaa
cagctactaaagggctcagctgaccctcttaatagtgcttttcacttgacctacaacatg
gttctgaacttgttgcgtgtagaagaaattaatcctgagtatatgttggaaaaatccttt
tatcaatttcagcattatagagctattccaggagtagtcgagaaggtaaagaaactagaa
gcacagtacaatgcaatagcaattcccaatgaagaaagtgtagtcatctactacaaaata
aggcagcagcttgccaaattggctaaagagattgaagaatatattcacaaaccaaagtac
tgtttgccatttttgcagccaggacgattggtgaaggtgaagaatgaaggggatgatttt
ggttggggagtagtggtgaatttctccaagaaatcaaatgttaagcccaattctggtgaa
ttagatcctttatatgtcgtagaagtacttttacactgtagcaaagagagcttgaaaaat
tctgctactgaggctgctaagccagcaaaacctggtgagaaaggagagatgcaggtggtt
ccagtcctggtgcacctcctatctgctatcagcagtgttcgactttatattcccagagat
ctgaggccagttgacaatcgacaaagtgtgctaaaatcaatacaggaagttcaaaaacgt
tttcctgatggtgttccattattagatcccattgatgatatgggcatacaagatcaagga
ctcaaaaaagtcatacagaaagtagaggcttttgaacatcgaatgtattctcatccactt
cataatgattcaaatttggaaactgtttacaagctttgtgaaagaaaagcacagattgct
gtagatattaaatctgcaaagcgagaactaaagaaagcaagaacagtcttacaaatggat
gaacttaagtgtcggaaacgtgttttgcgaaggctgggttttgctacatcttctgatgtc
atcgagatgaaaggacgagtggcttgtgagatcagcagtgctgatgagctgcttttaact
gaaatgatgtttaatggacttttcaatgacttatctgcagagcaagctactgcattgcta
agctgtttcgtatttcaggaaaattccactgaattgcccaaattgacagaacagttagca
ggaccacttcgccagatgcaggaatgtgctaaaaggattgcaaaagtttcagcagaggcc
aaattagaaattgatgaagaaacttacctaaacacattcaaatcaaacttaatggatgta
gtctatacctgggcaactggatgtacatttgcccacatctgcaaaatgaccgatgtcttt
gaaggcagcataattcgttgtatgaggcgtctggaagaattgcttcggcagatgtgtcaa
gctgcaaaagctattggaaacactgagctggagaataaattcgcagaaggaatcaccaaa
atcaagagagatatcgtgtttgctgcaagcctttatctgtaa
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