KEGG   Sarcophilus harrisii (Tasmanian devil): 100934305
Entry
100934305         CDS       T02286                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03440  Homologous recombination
shr03450  Non-homologous end-joining
shr04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    100934305 (RAD50)
   03450 Non-homologous end-joining
    100934305 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    100934305 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:shr03032]
    100934305 (RAD50)
   03400 DNA repair and recombination proteins [BR:shr03400]
    100934305 (RAD50)
DNA replication proteins [BR:shr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    100934305 (RAD50)
DNA repair and recombination proteins [BR:shr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     100934305 (RAD50)
    BRCA1-C complex
     100934305 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     100934305 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N AAA_15 DUF1664 DUF2703 ABC_tran AAA_29 AAA_16 Nup54_57_C AAA_13
Other DBs
NCBI-GeneID: 100934305
NCBI-ProteinID: XP_003756530
Ensembl: ENSSHAG00000010792
UniProt: G3WB07
LinkDB
Position
2:351234691..351317652
AA seq 1312 aa
MSKIEKMSIMGVRSFGIEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNTFVYDPKVAQETDVKAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRLVRQNQTGRVKECQTELKYLKQNKEKACEIRDQIVSKEAQLASSKEF
VKSYDNELGPLKIHLKEIEQNLSKIVRLDNDIKALESRKKQMEKDNSELEQKMEKVFQGT
DEQLNDMYHNHQRTVREKERRLIDCQRELDRTNKESKLLNHEKSELLVEQGRLQLQADRH
QQNIRARDSLIQSLATHLELDGFERAPFNERQIKNFQKLVKDIEERETEANRRMMNDFAG
KESMKQKQIDEIRDKKTGLERIVELKLEIQSKKQTELKNVKYELQELEGSSDRILELDQE
LGKTELALGKAEENSNVAALKEELPTLLREKGDLDRSLRKLDQEMEQLNHHTMTRTQMEM
LTRDKADKDEQIRKIKSRHNDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKFNKE
LASAEQNKNHINNELKQKEEQLSKYEDKLFDVCGSQDFESDLDKLMDEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RREKRRDEMMGLKPIRQNIIDLKEREIPELRNKLQNVNRDIQHLKGEIEEQETLLGTIIP
EEESAKACLTDVTIMERLQMELRDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHRLD
TVSSKIELNRKLIQDQQEQIQHLKSTVNELKSEKLQISSNLQRRQQLEEQTVELSTEVQS
LHREIKDSKEQLYPLEATLGKLQQEKEELIKKKNTSISAVQEKLNDIKEKVKNISSYMKD
IENYIQDGKDNYKMQNEAELNKVISQLNECEKQKDKISKEMGTMRQDIDMQKVQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQLKNEYQALEEKIETLKRNHSLALGRQKG
YEEEIIHFKRELREPQFSDAEEKYREMMIVMRTTELVNKDLDIYYKALDHAIMKFHGMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDTDENISASDKRRNYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIRKNIDQCSEIIKCNVSSLGSSVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtctaagatcgaaaagatgagcattatgggtgtgagaagttttggaatagaggacaag
gataagcaagttatcactttcttcagtcctttaaccattttggttggacccaatggtgca
gggaagacgaccatcattgaatgtctgaagtatatttctactggagatttccctcctggt
accaaaggaaatacatttgtttatgatccaaaggttgctcaagaaacagatgttaaagct
cagattcgtctacagtttcgtgacgttaatggggaacttgtagcagtacagaggtcaatg
gtatgcactcagaaaagtaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggtgaaaaggtgagcctcagctctaagtgtgcagaaattgaccgagaaatg
atcagttcccttggtgtttccaaagctgtgctcaataatgtaattttttgccaccaagaa
gattccaattggcctttaagtgaagggaaggccctgaaacagaaatttgatgaaatcttc
tcagcaacaaggtacattaaagctttggagacacttcgtttagtgcgtcaaaatcaaact
gggcgggtaaaggaatgtcagactgaactaaagtacctgaaacagaataaggaaaaagct
tgtgagattcgtgatcagattgtcagtaaggaagctcagttagcatcttctaaggaattt
gtcaagtcctatgataatgagcttggaccactgaagattcatctaaaagaaattgaacag
aatctttctaaaatagtgaggcttgacaatgacattaaagctctggaaagtagaaagaaa
caaatggaaaaggacaacagtgaattagagcagaaaatggaaaaggtatttcaggggact
gatgaacagctaaatgatatgtaccacaaccaccagagaacagtacgagaaaaggaaagg
agattgattgattgtcagcgagagctggacagaacaaataaagaatctaagctgctgaat
catgaaaaatcagaactgcttgtggaacagggtcgtctccaactacaggctgatcgccat
caacagaacatccgagctagagattcattaatacagtctttggcaacacatttagaacta
gatgggtttgagcgagcaccatttaatgaaaggcaaattaaaaattttcagaagcttgtg
aaggacatagaagaaagagaaacagaagctaataggcgaatgatgaatgactttgcagga
aaagaaagtatgaaacaaaaacagatagatgaaataagggataagaaaactggcctggaa
agaatagttgaactgaaattagaaattcaaagtaagaaacagactgaactgaaaaatgta
aaatatgaactacaagaattagagggatcttcggacagaattcttgaactggaccaggaa
cttggaaaaaccgagcttgcacttggcaaggcagaggaaaacagtaatgtagcagcactg
aaagaagaactaccaacactactgcgagaaaagggagatctggacagaagccttcgtaaa
ttagatcaggaaatggaacaattaaaccatcacaccatgacaagaacccaaatggaaatg
ctgaccagagacaaagctgacaaagatgaacaaataagaaaaataaaatctagacacaat
gatgaattaacgtcattgttaggctattttcccaacaaaaagcaacttgaagactggctt
catagtaaatctaaagaaattaatcagacacgggacagacttgccaaatttaataaagag
ctggcttcagcagaacaaaataaaaatcatatcaataatgaactcaagcagaaggaagaa
caattgtccaaatatgaagacaaattatttgatgtttgtggaagtcaggattttgaaagt
gatttagataagctaatggatgaaattgaaaaatcttctaaacagcgagcaatgcttgct
ggagccacagcagtttattcccagtttattactcagcttactgatgaaaaccaatcatgt
tgccctgtatgtcagagagtttttcagacagaagctgaactacaagatgtgataagtgat
ttgcaatccaagctacgccttgctcctgacaaactcaagtcaacagaatctgagctgaag
agaagagaaaaaagacgtgatgaaatgatggggcttaaaccaataagacaaaacataatt
gatttgaaggaaagagaaataccagaattgaggaataaactacagaatgtgaacagggac
atacagcatctaaaaggtgaaatagaagaacaagagacactcttaggtactataatacct
gaagaggaaagtgctaaagcatgcttaacagatgttactatcatggaaagattacagatg
gaacttagagatgttgaacgaaaaatagctcaacaagctgccaagttacaaggagtagat
ttggatcgaactgttcaacaagtaaaccaagaaaagcaagaaaaacagcatagattggac
actgtttccagtaaaattgagttgaatcgtaagcttatacaggaccagcaagaacaaatc
caacatctaaaaagtacagtaaatgaacttaaatcagaaaaacttcagatatctagtaat
ctgcaacgccgacagcagctggaggaacagacagtagaattgtctacagaagttcagtcc
ttacatcgagaaataaaagattcaaaagagcagttgtatcctttggaagccactctggga
aaattacagcaagaaaaagaagaattaattaaaaaaaagaatacaagtatcagtgcagta
caggaaaaattaaatgatatcaaagagaaggttaaaaacatttctagttacatgaaggac
attgaaaactatattcaagatggaaaagacaattacaaaatgcaaaacgaagctgaactg
aataaagtaataagtcagctaaatgaatgtgaaaaacaaaaagacaagataagtaaagaa
atgggaacaatgagacaagacattgatatgcaaaaggtgcaggaaaggtggctacaagat
aaccttactctgaggaagagaaacgaggaactgaaagaagttgaagaagaaagaaagcag
cacttaaaggagatgggacaaatgcaggtgttacagctgaaaaatgaatatcaggcatta
gaagaaaaaatagaaacactgaaaagaaatcacagtttagcattaggacgtcaaaaaggc
tacgaggaagaaattattcattttaaaagagaactgcgagaacctcagttttctgatgct
gaggaaaagtacagagaaatgatgattgtaatgagaacaacagaacttgtaaacaaggac
ctcgacatttattacaaggcattggatcatgcaataatgaagtttcatggcatgaaaatg
gaagaaatcaataaaattattcgtgatctctggagaagtacctaccgaggccaagatatt
gaatatatagaaattcgatctgatacagatgaaaacatatcagcttctgataaaaggagg
aattacaattatagagtagtgatgataaaaggagacacagctttggacatgcgaggacga
tgcagtgctgggcaaaaggtgcttgcttctcttatcattcgcttggccctcgcagaaact
ttctgtttgaattgtggcattcttgcgttggatgagcctacaacaaaccttgatagagaa
aacattgaatctcttgcacatgccctggtggaaataataaaaagtcgttcccaacaacgc
aacttccagcttcttgtgatcactcatgatgaagactttgtagagcttttgggtcgttct
gagtatgtggagaaattctacaggattagaaagaacatcgaccagtgctcagagataatc
aaatgtaatgtcagctccctaggttcttctgttcattaa

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