Sarcophilus harrisii (Tasmanian devil): 100934305
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Entry
100934305 CDS
T02286
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03440
Homologous recombination
shr03450
Non-homologous end-joining
shr04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100934305 (RAD50)
03450 Non-homologous end-joining
100934305 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
100934305 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shr03032
]
100934305 (RAD50)
03400 DNA repair and recombination proteins [BR:
shr03400
]
100934305 (RAD50)
DNA replication proteins [BR:
shr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100934305 (RAD50)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100934305 (RAD50)
BRCA1-C complex
100934305 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
100934305 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
DUF1664
DUF2703
ABC_tran
AAA_29
AAA_16
Nup54_57_C
AAA_13
Motif
Other DBs
NCBI-GeneID:
100934305
NCBI-ProteinID:
XP_003756530
Ensembl:
ENSSHAG00000010792
UniProt:
G3WB07
LinkDB
All DBs
Position
2:351234691..351317652
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSIMGVRSFGIEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNTFVYDPKVAQETDVKAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRLVRQNQTGRVKECQTELKYLKQNKEKACEIRDQIVSKEAQLASSKEF
VKSYDNELGPLKIHLKEIEQNLSKIVRLDNDIKALESRKKQMEKDNSELEQKMEKVFQGT
DEQLNDMYHNHQRTVREKERRLIDCQRELDRTNKESKLLNHEKSELLVEQGRLQLQADRH
QQNIRARDSLIQSLATHLELDGFERAPFNERQIKNFQKLVKDIEERETEANRRMMNDFAG
KESMKQKQIDEIRDKKTGLERIVELKLEIQSKKQTELKNVKYELQELEGSSDRILELDQE
LGKTELALGKAEENSNVAALKEELPTLLREKGDLDRSLRKLDQEMEQLNHHTMTRTQMEM
LTRDKADKDEQIRKIKSRHNDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKFNKE
LASAEQNKNHINNELKQKEEQLSKYEDKLFDVCGSQDFESDLDKLMDEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RREKRRDEMMGLKPIRQNIIDLKEREIPELRNKLQNVNRDIQHLKGEIEEQETLLGTIIP
EEESAKACLTDVTIMERLQMELRDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHRLD
TVSSKIELNRKLIQDQQEQIQHLKSTVNELKSEKLQISSNLQRRQQLEEQTVELSTEVQS
LHREIKDSKEQLYPLEATLGKLQQEKEELIKKKNTSISAVQEKLNDIKEKVKNISSYMKD
IENYIQDGKDNYKMQNEAELNKVISQLNECEKQKDKISKEMGTMRQDIDMQKVQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQLKNEYQALEEKIETLKRNHSLALGRQKG
YEEEIIHFKRELREPQFSDAEEKYREMMIVMRTTELVNKDLDIYYKALDHAIMKFHGMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDTDENISASDKRRNYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIRKNIDQCSEIIKCNVSSLGSSVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagatcgaaaagatgagcattatgggtgtgagaagttttggaatagaggacaag
gataagcaagttatcactttcttcagtcctttaaccattttggttggacccaatggtgca
gggaagacgaccatcattgaatgtctgaagtatatttctactggagatttccctcctggt
accaaaggaaatacatttgtttatgatccaaaggttgctcaagaaacagatgttaaagct
cagattcgtctacagtttcgtgacgttaatggggaacttgtagcagtacagaggtcaatg
gtatgcactcagaaaagtaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggtgaaaaggtgagcctcagctctaagtgtgcagaaattgaccgagaaatg
atcagttcccttggtgtttccaaagctgtgctcaataatgtaattttttgccaccaagaa
gattccaattggcctttaagtgaagggaaggccctgaaacagaaatttgatgaaatcttc
tcagcaacaaggtacattaaagctttggagacacttcgtttagtgcgtcaaaatcaaact
gggcgggtaaaggaatgtcagactgaactaaagtacctgaaacagaataaggaaaaagct
tgtgagattcgtgatcagattgtcagtaaggaagctcagttagcatcttctaaggaattt
gtcaagtcctatgataatgagcttggaccactgaagattcatctaaaagaaattgaacag
aatctttctaaaatagtgaggcttgacaatgacattaaagctctggaaagtagaaagaaa
caaatggaaaaggacaacagtgaattagagcagaaaatggaaaaggtatttcaggggact
gatgaacagctaaatgatatgtaccacaaccaccagagaacagtacgagaaaaggaaagg
agattgattgattgtcagcgagagctggacagaacaaataaagaatctaagctgctgaat
catgaaaaatcagaactgcttgtggaacagggtcgtctccaactacaggctgatcgccat
caacagaacatccgagctagagattcattaatacagtctttggcaacacatttagaacta
gatgggtttgagcgagcaccatttaatgaaaggcaaattaaaaattttcagaagcttgtg
aaggacatagaagaaagagaaacagaagctaataggcgaatgatgaatgactttgcagga
aaagaaagtatgaaacaaaaacagatagatgaaataagggataagaaaactggcctggaa
agaatagttgaactgaaattagaaattcaaagtaagaaacagactgaactgaaaaatgta
aaatatgaactacaagaattagagggatcttcggacagaattcttgaactggaccaggaa
cttggaaaaaccgagcttgcacttggcaaggcagaggaaaacagtaatgtagcagcactg
aaagaagaactaccaacactactgcgagaaaagggagatctggacagaagccttcgtaaa
ttagatcaggaaatggaacaattaaaccatcacaccatgacaagaacccaaatggaaatg
ctgaccagagacaaagctgacaaagatgaacaaataagaaaaataaaatctagacacaat
gatgaattaacgtcattgttaggctattttcccaacaaaaagcaacttgaagactggctt
catagtaaatctaaagaaattaatcagacacgggacagacttgccaaatttaataaagag
ctggcttcagcagaacaaaataaaaatcatatcaataatgaactcaagcagaaggaagaa
caattgtccaaatatgaagacaaattatttgatgtttgtggaagtcaggattttgaaagt
gatttagataagctaatggatgaaattgaaaaatcttctaaacagcgagcaatgcttgct
ggagccacagcagtttattcccagtttattactcagcttactgatgaaaaccaatcatgt
tgccctgtatgtcagagagtttttcagacagaagctgaactacaagatgtgataagtgat
ttgcaatccaagctacgccttgctcctgacaaactcaagtcaacagaatctgagctgaag
agaagagaaaaaagacgtgatgaaatgatggggcttaaaccaataagacaaaacataatt
gatttgaaggaaagagaaataccagaattgaggaataaactacagaatgtgaacagggac
atacagcatctaaaaggtgaaatagaagaacaagagacactcttaggtactataatacct
gaagaggaaagtgctaaagcatgcttaacagatgttactatcatggaaagattacagatg
gaacttagagatgttgaacgaaaaatagctcaacaagctgccaagttacaaggagtagat
ttggatcgaactgttcaacaagtaaaccaagaaaagcaagaaaaacagcatagattggac
actgtttccagtaaaattgagttgaatcgtaagcttatacaggaccagcaagaacaaatc
caacatctaaaaagtacagtaaatgaacttaaatcagaaaaacttcagatatctagtaat
ctgcaacgccgacagcagctggaggaacagacagtagaattgtctacagaagttcagtcc
ttacatcgagaaataaaagattcaaaagagcagttgtatcctttggaagccactctggga
aaattacagcaagaaaaagaagaattaattaaaaaaaagaatacaagtatcagtgcagta
caggaaaaattaaatgatatcaaagagaaggttaaaaacatttctagttacatgaaggac
attgaaaactatattcaagatggaaaagacaattacaaaatgcaaaacgaagctgaactg
aataaagtaataagtcagctaaatgaatgtgaaaaacaaaaagacaagataagtaaagaa
atgggaacaatgagacaagacattgatatgcaaaaggtgcaggaaaggtggctacaagat
aaccttactctgaggaagagaaacgaggaactgaaagaagttgaagaagaaagaaagcag
cacttaaaggagatgggacaaatgcaggtgttacagctgaaaaatgaatatcaggcatta
gaagaaaaaatagaaacactgaaaagaaatcacagtttagcattaggacgtcaaaaaggc
tacgaggaagaaattattcattttaaaagagaactgcgagaacctcagttttctgatgct
gaggaaaagtacagagaaatgatgattgtaatgagaacaacagaacttgtaaacaaggac
ctcgacatttattacaaggcattggatcatgcaataatgaagtttcatggcatgaaaatg
gaagaaatcaataaaattattcgtgatctctggagaagtacctaccgaggccaagatatt
gaatatatagaaattcgatctgatacagatgaaaacatatcagcttctgataaaaggagg
aattacaattatagagtagtgatgataaaaggagacacagctttggacatgcgaggacga
tgcagtgctgggcaaaaggtgcttgcttctcttatcattcgcttggccctcgcagaaact
ttctgtttgaattgtggcattcttgcgttggatgagcctacaacaaaccttgatagagaa
aacattgaatctcttgcacatgccctggtggaaataataaaaagtcgttcccaacaacgc
aacttccagcttcttgtgatcactcatgatgaagactttgtagagcttttgggtcgttct
gagtatgtggagaaattctacaggattagaaagaacatcgaccagtgctcagagataatc
aaatgtaatgtcagctccctaggttcttctgttcattaa
DBGET
integrated database retrieval system