Sarcophilus harrisii (Tasmanian devil): 100934585
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Entry
100934585 CDS
T02286
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04024
cAMP signaling pathway
shr04340
Hedgehog signaling pathway
shr04360
Axon guidance
shr05200
Pathways in cancer
shr05205
Proteoglycans in cancer
shr05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100934585 (PTCH1)
04024 cAMP signaling pathway
100934585 (PTCH1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
100934585 (PTCH1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100934585 (PTCH1)
05205 Proteoglycans in cancer
100934585 (PTCH1)
09162 Cancer: specific types
05217 Basal cell carcinoma
100934585 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
100934585
NCBI-ProteinID:
XP_003761358
Ensembl:
ENSSHAG00000014543
UniProt:
G3WNV6
LinkDB
All DBs
Position
1:227264593..227348263
Genome browser
AA seq
1520 aa
AA seq
DB search
MRRSVSSSSNHSKSRSHPQKEAFSGAYSPASPASSSSAPWWWWWGNRDKPARLMREQQGQ
LSHRGGGGGGNMASAVNIAEPESGGGGSGGCSRDPDLPGGNGSRRRRRTGGNRRAGAPDL
EYLQRPSYCDAAFALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLL
IFGAFAVGLKAANLETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPQEDGA
NVLTVEALKQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCL
IITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKINYQVDSWEEMLNKAEV
GHGYMDRPCLNPADPDCPLTAPNKNSTRPLDVALVLNGGCHGLSKKYMHWQEELIVGGTV
KNSTGKLVSAQALQTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRMYVEVV
HQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCAKSQG
AVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQ
NKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAM
VLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYTDSNDNTRYSPPPPYSS
HSFAHETQITMQSTVQLRTEYDPHTQVYYTTAEPCSEISVQPVTMTQDNLSCHSPESTSS
TRDLLSQFSDSNLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYG
TTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHKSFS
SVKYVMLEENKQLPKMWLHYFRDWLQGLQDAFDSDWESGKIMQNNYKNGSDDGVLAYKLL
VQTGSRDKPIDISQLTKQRLVDADGIINPKAFYIYLTAWVSNDPVAYAASQANIRPHRPE
WVHDKADYMPDTRLRIPPAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICNNYTSLGVS
SYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVEL
FGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVL
DGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGPYPEVSPA
NGLNRLPTPSPEPPPSMVRFAVPPRHMNNGSDSSDSEYSSQTTVSGISEELYQYENQQSS
CAPPHQVIVEATENPVFARSTVVQPEPRHHHPSSPRQKLHLDAGSQQSGHQGQQPQRDSR
EGLRPPPYRPRRNAFEISTEGHSGPSNRDRTGHRGARFHNPRNPAFTAMGTSVPGYCQPI
TTVTASASVTVAVHPPSMHSRNLRGGSCPSYEGYHETDHGVFEDPHVPFNVRCERRNSKI
EVIELQDVECEERTRGNSSN
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggtctgtcagcagcagcagcaaccacagcaaaagccggagccacccgcagaaa
gaagcgttctccggagcctactccccggcatcaccagccagctccagcagcgcgccgtgg
tggtggtggtgggggaaccgagacaagccagcccgcctgatgcgggaacagcaggggcag
ctcagtcaccgcggcggcggcggcggcggcaacatggcctcagctgttaacattgcggag
cctgagagcggcggcggcggcagcggaggctgcagcagagaccctgatctgcctggggga
aacggcagccggaggcggagaaggacgggagggaaccgacgcgctggggcaccagacctg
gagtatctgcagcggccgagctactgcgatgcggctttcgcgttggagcagatttctaag
gggaaggctaccggcaggaaagcgccgctgtggctgagagcgaagtttcagagactatta
tttaaactgggttgttacattcaaaaaaactgcggcaagtttttggttgtgggcctcctt
atatttggggctttcgctgtaggattaaaggcagctaatcttgaaaccaacgtggaagag
ctttgggtagaagttggtggacgagtaagtcgggagttaaattatacacgtcagaagatt
ggagaagaggctatgtttaatcctcagctcatgatccagacaccacaagaagatggtgcc
aatgttcttacagtagaggcactcaaacagcaccttgactctgcactacaggccagcagg
gtacatgtatatatgtataacagacagtggaaattggaacacttatgttacaaatcagga
gagcttatcacagaaacaggttatatggatcagataatagaatacctttatccttgttta
attatcacacctttggactgcttttgggaaggggcaaagttacaatcagggacagcatat
ctattaggtaaacctcctttgcagtggacaaactttgaccccttggaattcctggaagag
ttaaagaaaataaactatcaagtggacagctgggaggaaatgctgaataaagcagaggtt
ggtcatggttatatggatcgaccctgcctcaatcctgctgatcctgactgcccactcaca
gcccctaacaaaaattcaaccagacctcttgatgtggctcttgttttgaatggtggatgt
catggattatccaaaaagtacatgcactggcaggaggagttgattgtgggtggtacagtc
aagaacagcactggaaaactcgtcagtgctcaggctttacagactatgtttcaactaatg
actcccaagcaaatgtatgaacacttcaagggctatgaatatgtttcacatataaactgg
aatgaagacaaggcagcagcaattctggaagcctggcagagaatgtatgttgaggtggtt
catcagagtgttgcacaaaactctacccagaaggtgctttcttttactacaactactctg
gatgacatcctgaaatccttttcagatgtcagtgttatccgagttgctagtggctactta
ttaatgctcgcctatgcctgtttaactatgcttcggtgggactgtgccaaatcccaaggt
gctgtgggactggctggcgtcctgttggttgcactgtcggtagctgcaggattgggcctg
tgctcattgattggaatttcctttaatgctgcaacaactcaggttttgccttttcttgct
cttggagtcggtgtggatgatgttttccttttggcacatgcattcagtgaaacggggcaa
aataaaagaatcccttttgaggacaggacaggggaatgtttgaagcgaactggagccagt
gtggccctcacttcaatcagcaatgtcacagccttctttatggcagctttaatccctatt
cctgctcttcgggcattttcactccaggctgctatagttgtggtatttaattttgccatg
gttctgctcattttccctgctattctaagcatggacctatatagacgggaggacaggagg
ttggatatcttctgttgttttacaagtccttgtgtcagcagagtcattcaggttgaacct
caggcctacacagattccaatgacaacactcgttacagccctccaccgccatacagcagt
cacagctttgctcatgaaactcagatcaccatgcagtcaacagttcagttgcgcactgaa
tatgatcctcatacccaagtgtattataccaccgcagaaccttgctcagagatctctgta
cagcctgtcaccatgacacaggataacctcagctgccatagtccagaaagtacaagctca
acaagagatttactctctcagttctcagattcaaatcttcattgcctggagccaccttgt
actaagtggaccctttcatcttttgctgagaaacattatgcaccattcctcttgaaacca
aaagccaaggttgtggttatcttcctttttctgggtttgttaggagtcagcctgtatgga
accactcgagtgagagatgggctggatctgactgatattgtgccacgagaaacccgagaa
tatgactttatcgcagctcagttcaaatatttctctttctacaacatgtatatagttacc
cagaaagcagactatccaaatatccagcacttactttacgaccttcacaaaagtttcagc
agtgtgaagtatgtcatgttagaagaaaacaaacagctccctaaaatgtggttacactac
tttcgagattggcttcaaggactacaggatgcatttgacagtgattgggaatctgggaag
atcatgcagaataattataaaaatggatcagatgatggagtcctagcctacaaactcctg
gtacaaactggcagccgagataagcctattgacatcagccagttgactaaacagcgtctg
gtggatgcagatggtatcattaacccaaaagctttctatatctacctgacggcttgggtc
agtaatgacccagttgcatatgctgcctctcaggccaacattcgacctcaccgtcctgaa
tgggtccatgacaaagcagactacatgccagacacaaggctgagaatccccccagcagag
cccatcgaatatgctcagtttcctttctacctcaatgggttacgtgacacttcagacttc
gtagaagctattgaaaaagtgagaacaatttgcaataattacacaagccttggagtctcc
agctacccaaatggatacccatttcttttctgggagcagtacatcggtcttcggcactgg
cttctcttgtccattagtgtggtcttggcttgcacgtttctggtgtgcgcagtcttcctt
ctgaacccctggacggcagggatcattgtgatggtcctggcactaatgacagtggagctt
tttggcatgatgggtcttattggaatcaaattgagtgctgtacctgtggtcatcttgatt
gcttctgtcggcataggagtggaatttactgttcatgttgccttggctttcctgactgcc
attggagataagaatcgcagggctgtacttgcattggagcatatgtttgccccagttcta
gatggagctgtgtccactctcctaggggtactgatgcttgcaggatctgagttcgatttc
attgtcaggtatttctttgcagttctggcaatcttaactatcctgggtgttctgaatgga
ttggtattacttccggtacttttgtcattctttggaccctatcctgaggtttctccagct
aatgggttaaaccgactacccactccctcccctgagccacctcccagcatggtcagattt
gcagtacccccaagacacatgaacaatggatctgattcctctgactcagaatatagttct
cagacaacagtgtcaggcatcagtgaagagctttatcaatacgagaatcaacagagttca
tgtgccccacctcatcaagtaatagtggaagccacagaaaacccagtctttgccagatcc
actgtggttcaaccagagccaagacatcatcatccatcaagcccaagacaaaagctccac
ctggatgctggatcccagcaatctgggcatcaaggccaacagccacagcgggactccagg
gaaggactgcgaccgcccccttatcggccacgaaggaacgcttttgaaatttctactgaa
gggcattctggacctagcaatagggaccgaacgggccaccgaggagcccgttttcataac
cctcggaacccagcattcactgccatgggcacttctgtgccaggatattgccaacctatc
actactgtgaccgcttccgcttcagtgacagtggctgtgcatcctccctctatgcatagc
cggaaccttcggggaggaagctgcccatcctatgaggggtatcatgaaactgaccatggg
gtgtttgaggacccccatgtaccttttaatgtaagatgtgagaggaggaactctaaaata
gaagtcatagagctgcaagatgttgagtgtgaagaaaggacaaggggaaacagctccaat
taa
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integrated database retrieval system
