Sarcophilus harrisii (Tasmanian devil): 100934609
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Entry
100934609 CDS
T02286
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03008
Ribosome biogenesis in eukaryotes
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100934609 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
100934609 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100934609 (XRN1)
03009 Ribosome biogenesis [BR:
shr03009
]
100934609 (XRN1)
03016 Transfer RNA biogenesis [BR:
shr03016
]
100934609 (XRN1)
03036 Chromosome and associated proteins [BR:
shr03036
]
100934609 (XRN1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100934609 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
100934609 (XRN1)
Ribosome biogenesis [BR:
shr03009
]
Eukaryotic type
Pre-60S particles
RNases
100934609 (XRN1)
Transfer RNA biogenesis [BR:
shr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100934609 (XRN1)
Chromosome and associated proteins [BR:
shr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100934609 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100934609
NCBI-ProteinID:
XP_031813682
Ensembl:
ENSSHAG00000016207
LinkDB
All DBs
Position
3:50383654..50469884
Genome browser
AA seq
1790 aa
AA seq
DB search
MVWAGGACVVIGGATTEEAAKARAGGLVSVWRRLQAGSVTVDMGVPKFYRWISERYPCLS
EVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFADIFHYLEVLFRIIKPR
KVFFMAVDGVAPRAKMNQQRGRRFRAAKEAEDKIKKALEKGEILPTEARFDSNCITPGTE
FMARLHEHLKYFVNMKISSDKSWQGVTIYLSGHETPGEGEHKIMEFIRSEKGKPDHDPNI
RHCLYGLDADLIMLGLTSHESHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYI
DYEFSALKDKISFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYRTYMTVL
PELGGYINENGHLNLPRFEKYLIKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGIAA
EEAKNYKQKKLKGQENSMCLAALDKTEEEVMTSKSVVEDEPEDDDLFETEFRQYKRTYYM
TKMGVEIVSDDFLADQAECYVQAIQWILHYYYHGVQSWSWYYPYHYAPYLSDIRNISELK
IQFELGKPFMPFEQLLAVLPAASKDLLPGCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQE
WEAVVLIPFIDETRLLQAMESCNKYLKEEEKKRNRHSECLMYWFDQDAGFKYPSPWPEKF
LTIEKCRARYKIISLDAWHVDINHNKITKVDEKTLYFCGFPTLKHIKHKFFLKKSGVQVF
QQSSRGENMMLEILVDNDSDELQIENIASLVLGKSVFVNWPHLEEARVVAVSDGETKFYL
EETQGTQKLYLGKSAPPTKVAHVGDKEQSNWMKEVQAISELYQRRKGIIINETSVVVYAQ
LLTGHKYQLNQNGEVHLEKQWSKQVLPFVYQTIVKDISAFETHFSNIKTLGDLFPPRSTV
FMLGTPYYGCTGEVQDSGDVITEGRIRVVFNIPCEPHLDALIQNQHKYSIKYNPGYVLAS
RLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGNEWMY
SCAVEQLLAEYLERVPELFSYVAKNSQEDVFYEDDIWPGENENGAEKVQEIVTWLKAHPV
SALSRSSCDLQILDAAIVEKIEEEVEKCKQRKSNKKVRVTVKPHLLYRPLEQQQGIIPDR
DAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGASREADVLFEVLFDEEFHGGLRIRCSPA
RGYRLPTSALINLSHGNRSETGNQKLTAIVKPQPAVNPCTSSSSGPFASASQKTHLGSNN
SRSVLTSTQVLVKDDDEFCSIWQSLQGSGKPQHFQQNSQEKSLVLPQEINKGTTPTQYHK
PGFNDSTIKSQQRKCDQYRRFKEDGKISKNESQSQKTVNKQTFGGTPKSNVKLLKRNESS
NAAEVQKVVTDDSNPTGKTDPGIENFLISLKITKENEVQYDEEPTTSEEHLSPQSFAMKG
TQMLKEILKIDGSDPADHKNEVKQLVNEVNASSNRKEVYGSSQPRQTKKLAAYMNKPHNP
GDCHNAPAIDSLGRPVLNQQPPLSTPVSELSRLCSLVGMPQPDFTFLRTPQTMTVCQVKL
SNGLLIHGPQCPSENEAKEKAAFFALQHLSTVGMNFPLPPPMFPNYPPAVPTGAIPPVFA
PPTGWDHYGSSLAFGAANMMPPSPHIFSSMPWGSPMPIPGKPYHHHTPYPTNMPLTGPVP
VAPHNQFIPLQVTKKRAANKRNVECKAAPGCSQATPLQPESPGMSEGAQLTSQESSSTLK
SPQVPPTTISFQDRLAPSGSGTSRGKSTPGSSRRKSRKLAVNFGVSKPSE
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atggtctgggcgggcggggcctgtgttgtcatcggcggcgcgacgacggaggaggcggcc
aaggcccgggcggggggtttggtttcggtttggcgacggctgcaagcggggtcggtgacg
gtcgacatgggagtccccaagttttatcggtggatctcggagcggtatccctgcctcagc
gaggtggtgaaggagcatcagattcctgaatttgacaacttgtacctggatatgaatgga
atcatacatcaatgttcacatcctaatgatgatgatgttcatttcagaatttctgatgat
aaaatttttgctgatatttttcactacttagaggtattgtttcgcattattaagcccaga
aaagttttctttatggcagttgatggtgtggctccaagggcaaaaatgaaccagcaacgt
ggaagacgttttcgggcagcaaaggaggcagaggacaaaatcaaaaaagcattagaaaag
ggagaaattcttcctacagaagcgagatttgactccaactgtattacaccaggaactgaa
ttcatggccagattacatgagcatctgaagtattttgtaaatatgaagatttcctcagac
aagtcatggcaaggagttactatctacttatcaggccatgagactccaggagaaggagag
cacaaaatcatggaatttatccgatccgagaaaggaaagccagatcatgatccaaacatc
agacattgtctttatggtttagatgctgacttgattatgcttggattaacaagccatgag
tcacatttctctcttttaagggaggaggtccgatttggtggcaagaaaacacaaagagta
tgtgcaccagaagaaactacatttcacctcctacacttatctttaatgagagaatatatt
gactatgagttttctgcattaaaggacaagatttcctttaaatatgacattgaaaggata
atagacgattggattttaatgggatttcttgttggcaatgattttattcctcatctacct
catttgcatatcaatcatgatgcactgcctcttctttatagaacttatatgactgtcttg
ccagaacttggtggttatattaatgaaaatggccatctcaatttacctcggtttgagaaa
tatcttataaaactgtctgattttgatcgtgaacatttcagtgaagttttcgttgatttg
aaatggtttgaaagcaaagttggcaacaaatacctcaatgaagcagcaggtattgcagca
gaagaagcaaagaactacaaacaaaagaaactaaagggccaggaaaactccatgtgtttg
gctgctttagacaaaactgaagaagaagtgatgacttcaaagagtgtcgtagaagatgaa
cctgaagatgatgacctctttgaaacagaatttagacagtacaagagaacatattacatg
acaaagatgggggtagaaattgtttcagatgactttttggccgatcaagctgaatgttat
gtgcaggcaatacagtggattctgcactactattatcatggagttcagtcctggagttgg
tattacccttaccattatgcaccttacctatcagatattcgcaacattagtgaactcaaa
attcagtttgaattaggaaaacctttcatgccatttgaacagcttcttgcagtactgcca
gcagccagcaaagatttgcttcctggatgctaccagcatttgatgactagtgaagactct
ccaattatagaatactatcctccagattttaaaactgatctaaatgggaaacaacaagaa
tgggaagctgtcgttttaatcccatttattgatgaaacccgactactgcaggccatggag
tcgtgcaacaaatatttgaaagaagaggagaaaaagaggaacaggcatagtgagtgcctg
atgtactggtttgaccaggatgccgggtttaagtacccctcaccctggcctgagaagttc
ctcaccattgaaaagtgccgtgccaggtataaaataatatctttagatgcttggcatgtg
gatattaatcataataaaataactaaagttgatgaaaagacactgtatttctgtgggttt
cctactttaaagcacatcaaacacaagttttttctgaagaaaagtggggtacaagtattc
caacaaagcagccgtggagagaatatgatgttagaaatcctagttgataatgactcagat
gaacttcaaatagaaaacattgcctcattggtgctcggaaagtctgtctttgttaactgg
cctcaccttgaagaagctagagttgtagcagtatccgatggagaaactaagttttactta
gaagaaactcaaggaacacagaagctttatttgggaaaaagtgccccaccaactaaagtg
gctcatgttggagataaagaacagtctaactggatgaaagaagtccaagcaatctcagaa
ctctaccagagaagaaaaggaataataataaatgaaacttctgttgttgtgtatgctcag
ttacttaccggtcataaatatcaattaaatcaaaatggtgaggttcatctggagaaacag
tggtcaaaacaagttcttccttttgtttatcaaactattgtcaaggatatcagtgctttt
gagacacatttctctaatatcaaaacattgggtgacctatttccacctagaagtacagtc
tttatgctgggaactccttactatggctgcacaggcgaagttcaggattcaggggatgtg
atcacagaaggtagaattcgtgtggttttcaacattccatgtgaacctcatcttgatgcc
ttaatacagaaccagcataaatattctataaaatacaatcctggatatgttttggccagt
cgtcttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaaga
ggatctaggagaaatccccatggagaccacaaagccaatgtggggttgaacttgaagttc
aataagaagaatgaagaggttcctggttacaccaaaaaagttggcaatgaatggatgtat
tcttgtgctgtggagcagctcctggcagagtaccttgaaagggtaccagaactctttagt
tacgtagctaagaacagccaagaagatgtgttctatgaagatgacatttggcctggtgaa
aatgagaatggtgctgagaaagttcaagaaattgttacgtggctaaaggcgcatcctgtc
agtgctttgtctcgctcatcttgtgatttacaaattctggatgcagctattgttgagaaa
attgaagaagaagtagaaaagtgcaagcaaaggaagagtaataagaaggtacgagtgaca
gtgaaaccccatttactgtacagacctttagagcaacagcaagggattattcctgatcgg
gatgcagaattccgtctttttgatcgtgttgtaaatgtgagagaaaacttttcagttcct
gtgggtctccgtggcaccatcataggaattaaaggagctagtagagaagcagatgtgctt
tttgaagtattatttgatgaagaatttcatggaggtttaaggataaggtgctcaccagca
agaggttatcgactgccaacaagtgccttaattaacctttctcatggtaatcgctcagag
actggaaatcagaaattgacagccatagtgaagccgcagcctgctgtgaacccatgtact
tcaagttcatctggtccgtttgcttcagcttctcagaaaactcatttaggctccaacaat
tctcgatcagttttgacttctactcaagtacttgttaaagatgatgatgaattttgcagt
atttggcaatcactacaagggtcaggaaagcctcaacattttcagcagaattcacaagag
aagagtttggttctacctcaagaaataaacaaaggaactactcctactcagtatcataaa
cctggcttcaatgacagcaccattaagagtcagcaaagaaagtgtgaccaatatagaaga
tttaaagaagatggtaaaatttctaagaatgaatctcaatcacaaaagaccgtaaataaa
cagacttttggaggaacccccaaatctaatgttaagcttttgaagagaaatgaaagttcc
aatgccgcagaagtccaaaaggttgtaactgatgattcaaatccaactgggaagactgac
cctggaattgagaatttcctaatatccttgaaaattaccaaggagaatgaagtgcaatat
gatgaagaaccaacaacaagtgaagaacatttgtcgccacagtcatttgctatgaaggga
acacagatgcttaaagaaattctgaaaattgatggctctgaccctgcggaccacaagaat
gaagtaaaacaattagttaatgaagttaatgcttcttctaataggaaagaggtctatgga
tcttcacagcctaggcaaaccaagaagttagcggcttatatgaataagcctcataatcca
ggggattgtcataatgctccagcaatagacagtttaggccgacctgtcctcaatcagcag
ccacctttgtctacaccagtatcagagctttccagactttgttctcttgttggaatgcca
caaccagatttcacctttctcagaacgccacagacaatgacagtttgtcaggtaaaattg
tctaatggcttactaatacatggaccacaatgcccatctgaaaatgaagccaaggagaaa
gctgctttttttgctttacaacacctgagcactgtaggaatgaattttcctttgcctcca
ccaatgtttccaaattatccacctgctgtacccaccggggccattcctcccgtgtttgcc
ccacctactggctgggatcactatggaagcagcttagcctttggggcagctaatatgatg
cctccatcgcctcacatctttagctcaatgccctggggatctccaatgccaattcctggg
aagccttatcaccaccatactccatatcccaccaacatgcctctcacaggaccagtgcca
gttgcacctcacaatcagttcatacctcttcaggttacaaagaaaagagctgcaaacaaa
agaaacgttgagtgtaaggcagcccctggctgttctcaggccactcctcttcagccagag
tccccaggaatgtcagaaggtgcccagttaacttcacaggagagttcatcaactttaaag
tcacctcaagttcctccaactacaatttcttttcaagacagattagccccttcaggttct
ggtacttctcgtggtaaatcaacaccaggttcttcacgaagaaaatcaaggaaactggca
gtcaactttggtgtttctaaaccatcagaataa
DBGET
integrated database retrieval system
