Sarcophilus harrisii (Tasmanian devil): 100934931
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Entry
100934931 CDS
T02286
Symbol
VPS4B
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X2
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03250
Viral life cycle - HIV-1
shr03272
Virion - Hepatitis viruses
shr04144
Endocytosis
shr04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100934931 (VPS4B)
03272 Virion - Hepatitis viruses
100934931 (VPS4B)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
100934931 (VPS4B)
09143 Cell growth and death
04217 Necroptosis
100934931 (VPS4B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shr04131
]
100934931 (VPS4B)
03400 DNA repair and recombination proteins [BR:
shr03400
]
100934931 (VPS4B)
Membrane trafficking [BR:
shr04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
100934931 (VPS4B)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
Check point factors
Other check point factors
100934931 (VPS4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Vps4_C
MIT
AAA_lid_3
TIP49
AAA_16
AAA_14
AAA_5
AAA_22
RuvB_N
IstB_IS21
AAA_25
DUF815
AAA_18
AAA_2
NPHP3_N
nSTAND3
AAA_33
AAA_17
AAA_24
RNA_helicase
PhoH
AAA_28
AAA_7
Mg_chelatase
TPR_1
Parvo_NS1
ResIII
NACHT
bpMoxR
ABC_tran
AATF-Che1
DUF5113
Motif
Other DBs
NCBI-GeneID:
100934931
NCBI-ProteinID:
XP_003759698
Ensembl:
ENSSHAG00000017852
UniProt:
A0A7N4V1T8
LinkDB
All DBs
Position
1:complement(429479632..429508964)
Genome browser
AA seq
442 aa
AA seq
DB search
MTSANLQKAIDLANKAAQEDKAGNYEEALHLYQNAVQYFIHVVKYEAQGDKAKQSIRAKC
TEYLDRAEKLKEYLKKKEKAPQKPVKEGQSSPTDEKGNDSDGDGESDDPEKKKLQNQLQG
AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY
LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEVDSLCGS
RSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
DHARTAMFKLHLGTTHNSLSEADFRELGKKTDGYSGADISIIVRDALMQPVRKVQSATHF
KRIRGPSPTNPNVIVEDLLTPCSPGDPGAIEMTWMDVSGDKLLEPAVSMPDMLRSLASTK
PTVNEHDLLKLKKFTEDFGQEG
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacatctgccaatctccagaaagcaatagaccttgctaacaaagcagcacaagaagat
aaagcagggaactatgaagaagccctccatctatatcaaaatgctgtacagtattttatc
catgtagttaaatatgaagcacaaggtgacaaagcaaagcaaagtatcagggcaaagtgt
acagaatatcttgatagagccgagaaactaaaagaatacctgaaaaagaaagagaaagcc
ccccagaagccagtgaaagagggacaatccagcccaactgatgagaagggaaatgacagt
gatggggatggagaatcagatgacccagaaaaaaagaaactacagaatcaacttcaaggt
gccattgttatagaacgaccaaacgtaaaatggagtgatgttgctgggcttgaaggagcc
aaagaagctcttaaagaagctgtgatattgcccattaagtttccacatctttttacaggt
aaaagaaccccttggaggggcatccttctttttgggccacctggaacagggaaatcctac
ttggccaaagcagttgctacggaagccaacaactcaacatttttttccatatcttcttct
gatcttgtctccaagtggctaggtgaaagtgaaaagttagttaagaatttatttcagctt
gctagagaaaacaagccttccatcatcttcattgatgaagttgattctttgtgtggctct
agaagtgaaaatgaaagtgaagctgcccggcgaattaaaacagaattcctagttcaaatg
caaggggttggtgtggataatgatggaattttggtactgggagctacaaatataccctgg
gttctggattctgctatcaggcgaagatttgagaaacgtatttatattcctttacctgaa
gatcatgccaggacagcaatgtttaaattacatttggggactacacacaacagcctatca
gaagcagacttccgagaactggggaaaaagacagatggctattcaggagctgacatcagt
atcattgtacgagatgcactgatgcaacctgtgaggaaagttcagtcagctactcatttc
aaaagaattagaggtccttcgcccactaatcctaatgtcatagtagaagatttacttact
ccatgctctccgggtgatcctggtgccattgaaatgacatggatggatgtctctggagat
aaacttttggagccagctgtttccatgcctgacatgttacggtcattagctagcacaaag
ccaactgttaatgagcatgacttgctgaaattaaagaagtttacggaagattttggtcaa
gaaggctaa
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