Sarcophilus harrisii (Tasmanian devil): 100935181
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Entry
100935181 CDS
T02286
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100935181 (CSTF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100935181 (CSTF1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100935181 (CSTF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
CSTF1_dimer
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_NUP159_NUP214
Ge1_WD40
Beta-prop_HPS5
VPS8_N
PROPPIN
Beta-prop_WDR75_2nd
Frtz
DUF7099
Motif
Other DBs
NCBI-GeneID:
100935181
NCBI-ProteinID:
XP_003757719
Ensembl:
ENSSHAG00000013103
UniProt:
G3WIW8
LinkDB
All DBs
Position
2:232437899..232449160
Genome browser
AA seq
431 aa
AA seq
DB search
MYRTKVSLKDRQQLYKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMEN
DDSAVQYAIGRSDTVAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPT
LRLYDINTFQCFVSCNPQDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAV
FNHTEDYVLLPDERTISLCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRSTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtacaggacaaaagtgagcttaaaagatcgccagcaactctataaactgatcatcagc
caactgctctatgatgggtatatcaacattgctaatggtctcatcaatgaaatcaagcct
caatctgtgtgtgcaccctctgaacagctccttcatctcatcaaattaggaatggaaaat
gatgatagtgctgttcagtatgcaattggacgctcagatacagttgctccaggcacagga
attgacctggaatttgatgcagatgttcagaccatgtccccagaggcttcagaatacgaa
acttgctatgtcacatctcataaaggaccatgccgtgtggctacttacagcagagatgga
cagttaatagctactggatctgctgatgcttcaataaagatactagatacagaaagaatg
ttagcaaaaagtgctatgccaatagaggtaatgatgaatgagactgcccagcagaatatg
gaaaatcatcctgtcatcagaactctatatgatcatgtggatgaagttacatgtctagct
ttccacccaacggagcaaattctagcatcaggttcaagggactatactcttaagttgttt
gattattccaaaccatctgccaaaagagccttcaaatacattcaggaagctgaaatgtta
cgttcaatctcatttcatccttctggagacttcatacttgttggaacccaacatccaacc
cttcggctttatgatatcaatacatttcaatgttttgtgtcttgcaaccctcaagatcaa
cacactgatgcaatatgttcggttaattataatcctagtgccaacatgtatgtgactggt
agtaaagatggctgcatcaaattatgggatggtgtctcaaatcgttgtattactactttt
gagaaagcacatgatggtgctgaagtctgctctgcaattttttccaaaaattcaaaatac
attctttcaagtggaaaggactctgtagctaaactatgggagatttcaacaggacgaaca
ttagtcagatatacaggtgctggcttgagtggacgacaagtacacagaactcaagcagtc
tttaaccacacagaagattatgtattacttcctgatgaaaggacaattagtctttgctgc
tgggactcgagaacagctgaacgaagaaatttactttccctggggcacaacaatattgtt
cgttgtatagtacattctcccaccaaccctggcttcatgacttgcagtgatgacttccgt
gctcgcttttggtatcggagatcaaccacagattag
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