Sarcophilus harrisii (Tasmanian devil): 100935273
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Entry
100935273 CDS
T02286
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100935273 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100935273 (CNOT1)
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100935273 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100935273 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
100935273
NCBI-ProteinID:
XP_031805805
Ensembl:
ENSSHAG00000012187
LinkDB
All DBs
Position
2:complement(37283734..37377753)
Genome browser
AA seq
2385 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYSEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASIEECRNIIVQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLQNVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTAALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPPDVSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYESKMYFFGIAALDR
FKNRLKDYPQYCQHLASISHFMRFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTL
LVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKR
VSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHW
LGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPW
TMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLEEQLSA
PKKDVKQPEALPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNP
TIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMR
IAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQD
NCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIR
LKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYEKCITE
LEQHLHAIPPALGMNPQSQTLRSLLDAVVMSRNSRDAIAALGLLQKAVEGLLDATSGADA
DLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVN
MQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHS
RGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLRE
WVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISY
RAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVV
GVLLQDHDVRQNEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKA
PGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELSKPMQIL
YKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLK
VDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYN
IQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIA
NQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIK
NPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcgacacggc
ccggaggcagataggcatttattacgctgcctattttctcatgtggatttcagtggcgat
ggtaaaagtagcggcaaagattttcatcagactcagtttctgattcaggagtgtgcatca
ttgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtctaaagccttcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaggttcaagaggtcatttttggtcttgctctcttgaattcttccagctcagat
ctacgaggttttgctgcccaatttgtcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgccatagaggtc
ctgcacctcctcctctcccatctcctttttgggcagaagggagcttttggggttggacag
gaacagattgacgcttttcttaagacactgcgtagagattttccccaggaacgttgtcct
gtggtgcttgcaccactactttactctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagctaaaaccatgatggagagctctctggcagacttcatgcaa
gaagtaggctatggcttctgtgcaagtattgaagaatgtcgcaatataatcgtgcagttt
ggtgttcgagaggtcacagctgctcaggttgccagggttttgggaatgatggctcggact
cattcaggattgacagatggcattccattacaatctatctcagctcctggcagtggaata
tggagtgatggaaaagataaaagtgatggtgcacaggcccatacctggaatgttgaagtc
ttaattgacgttctcaaagagttgaatccaagtttgaatttcaaggaagtaacttatgaa
ttggaccatcctggatttcaaattcgtgacagcaaaggacttcagaacgtagtatatggc
attcagagaggtctgggcttggaagtcttcccagtggatcttatttataggccttggaaa
catgcagagggccagctctctttcattcagcattcgctgataaatcctgaaatcttctgc
tttgctgactatccctgtcacacagttgccactgatatcctcaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcctggacttgattgaatctctcttgcgacta
gcagaggtgggacaatatgagcaagtcaaacagctcttcagctttcccatcaagcactgt
ccagatatgttggtattggccttactacagatcaacacttcttggcatacactgcgccat
gaactcatctccaccctgatgccaattttccttggaaaccatcccaactctgccattatt
ttgcactatgcctggcatgggcagggacagtctccctcaattcgccagcttatcatgcac
gccatggcagaatggtatatgcgaggagagcagtatgaccaggccaaattgtctcggatt
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgtcgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcgtgtatgactttctta
aagagacggtgcccttccatcttgggcggccttgccccagagaaagatcagccaaaaagt
gctcagcttcctccagaaacactggcaacgatgttggcttgtctgcaggcttgtgcgggg
agtgtttctcaagagttgtcagagactatcctgaccatggttgccaactgcagtaatgtt
atgaataaggctcgacagccaccaccaggagttatgccaaagggacgtccccctagtgca
agcagcttagatgccatttctcctgtacagattgacccccttgctggaatggcatctctt
agtataggaggttcagctgctccacacacccaaagtatgcagggttttcctccaaatttg
ggttctgctttcagtacccctcagtcaccagcaaaagcctttccacccctttctactcca
aatcagactacagctttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttggcacaggtagcttgactggcataggaacagcagctctgggactccctgcagtgaat
aatgatccatttgtgcagaggaagttgggcacctccggattgaaccaacctacattccag
cagagtaagatgaaacctccggacgtgtctcaggtgtggccagaagcaaaccagcacttt
agtaaagagattgatgatgaagcaaacagctactttcagcgcatctataatcatccaccg
catccaaccatgtctgttgatgaggtattagaaatgttacagaggtttaaggattccaat
attaaaagggaacgagaggtgtttaattgtatgctgaggaatttgtttgaagaatatcgg
tttttcccccagtaccctgataaagagctgcacataacagcctgcctgtttggtgggatc
atagaaaaaggactggttacttacatggcacttggcctggccctgcgctatgttcttgaa
gccttacgcaagccttatgaatccaaaatgtatttttttgggattgctgcactagataga
tttaaaaatagattgaaggactatccccagtactgtcagcacttggcctccattagtcac
tttatgcggtttcctcatcatctgcaggagtacatcgaatatggacagcaatctagagac
cctcctgtgaaaatgcagggttccattactacccctggaagtattgcacttgctcaggcc
caggcccaggcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcact
attgtaaccacctcaaccactactactgtggctaaaaccatcacaatcaccaggcccaca
ggagtcagctttaaaaaagatgtgccaccgtctattaatactacaaatattgataccctg
ctggtggctacggaccaaactgaaagaattgtggagcctccagaaaatgtccaggaaaaa
attgcttttatcttcaacaacctttctcagtcaaacatgacacaaaaagttgaagagttg
aaggaaacagtgaaagaagagtttatgccttgggtttcacaatatcttgtcatgaagaga
gtcagtattgagccaaactttcacagcctttattcaaattttcttgatacacttaagaat
cccgaatttaataagatggttctgaatgagacctacagaaatattaaagtgcttctgacg
tcagataaagcagcagccaacttctcagaccgttccttgctgaagaacctgggccactgg
ctggggatgatcacactagccaaaaacaaacccatcttacatacagacttagatgtaaaa
tctttattgttggaagcttatgttaaaggacagcaggaattgctgtatgtggtgcccttt
gttgccaaagtcttagaatccagtgttcggagtgtggttttcaggccaccaaatccttgg
acaatggcaattatgaatgtactagctgagcttcaccaagaacatgatttaaagttaaac
ttgaagtttgagattgaggttctctgcaagaatcttgccctggacatcaatgagctaaaa
cctgggagcctcctgaaagacaaggacagacttaaaaacttagaagagcagctctctgcc
cccaaaaaggatgtcaagcagccagaagcacttcctcccatcacaactaccactacttct
accacaccagctaccagtaccacttgtacagctactgttcctccacagcctcaatacagc
taccatgacatcaatgtctattccctgggaggtctggcgccacatattactctaaatccc
acgattccattgtttcaggcccatccacagttgaagcagtgtgtacgtcaagcaattgaa
cgtgctgtccaagagcttgtccatccagtagtggatcggtcaattaagattgccatgact
acttgtgaacagattgtcaggaaagactttgcactggattctgaggagtcacgcatgcgg
atagcagctcatcacatgatgaggaacctgacggctggcatggctatgataacttgcagg
gaacctttactcatgagcatagctaccaatttgaaaaacagctttgccacagcacttcga
gccgcatccccccagcagagggaaatgatggaacaggcagcagcgcagctagctcaggat
aattgtgaattggcatgctgcttcattcagaagactgcagtagaaaaggcaggtccagaa
atggacaagagattagcaactgaatttgagcttcgaaaacatgcaaggcaagaggggcgc
aggtattgtgatcctgttgttttgacgtaccaggctgagcggatgccagagcagatcaga
ttgaaggttggtggtgtagacccaaaacagctggctgtttatgaagagtttgcacgtaac
gttcctggcttcttgcctaccaatgatttaactcagcctacagggtttttagctcagcct
atgaagcaagcatgggctactgatgacgtagcacagatctatgaaaagtgtatcacagaa
ctggaacagcacctgcatgccatccctccagccttaggcatgaaccctcagtctcagact
ctccggagccttctggatgccgttgtaatgtcgcgcaactctcgggatgccattgctgcc
ctgggcttgctgcagaaggctgtggagggcttgcttgatgccacaagtggtgcagacgct
gacctgctgctacgttaccgggagtgtcacctccttgtactgaaagcattacaggatggc
cgtgcatatgggtctccatggtgtaacaaacagatcacaaggtgcctgatagagtgtcgg
gatgagtataagtataatgtggaagcggtagagctgttaattcgcaatcatctggttaat
atgcagcaatatgatcttcacctggctcagtcaatggagaatggtttgaactacatggcc
gtagcatttgctatgcagttggtgaaaatactgttggtggatgaaagaagtgtggcccat
gtgactgaagccgatctgtttcataccatcgagactctgatgaggatcaacgctcactca
cgaggaaatgcccccgaagggttgccccagctgatggaggtggtgcggtcaaactatgag
gctatgatcgaccgcgcacacgggggccccaactttatgatgcactcaggcatctcacag
gcctctgagtacgatgatcctccgggcctgcgggagaaggcagagtacctgctgcgggag
tgggtgaacctttaccactcggcagcggccggccgcgacagcaccaaagccttctctgcg
tttgttggacaggtagagcttttggagagaaagatgcaccagcaaggaatcctgaagact
gatgacctcataacaaggtttttccgtctgtgcactgaaatgtgtgttgaaatcagctac
cgggctcaggctgagcagcagcataatcctgctgccaaccccacaatgatccgggccaag
tgttatcataacctggatgcctttgtgcggctcattgcactgctggtcaagcactcaggg
gaggccactaacacagtcaccaagatcaatctattaaacaaggttcttggtatagtagtg
ggtgtccttctgcaggatcatgatgttcgacagaatgaatttcagcaacttccctaccac
cggattttcatcatgctgctcttagaactaaatgctcctgagcatgtgttggaaaccatt
aatttccagacactgacagctttctgcaatacattccacatcttgaggcctactaaagcc
ccaggctttgtgtatgcctggcttgaactgatctcgcatcggatatttattgcaagaatg
ctggcacacacaccacagcagaagggctggcctatgtatgcacaactattgattgattta
ttcaaatatttagctcccttccttagaaatgtggaactcagcaaacctatgcaaatcctc
tataagggtactttacgagtgctgctggtcctcctacatgatttcccagaatttctctgt
gactaccactatggattttgtgatgtaatcccacccaattgcatccagttaaggaatctg
atcctgagtgcctttccacgaaacatgaggctacctgacccattcactcccaacctgaag
gtggacatgttaagtgagatcaacattgctcctcggatcctcactaatttcactggagtg
atgcctcctcaattcaaaaaggatttggattcctatcttaaaactcgatcgccagtcact
ttcctatctgatttgcgcagtaacctacaggtatcaaatgaacctggcaatcgctacaac
atccagctgataaacgcactggtgctttacgtcggtactcaggccattgcccatatccac
aacaaaggcagcacgccgtccatgagcaccatcactcactcggcgcacatggacatcttc
cagaacttggctgtggacctagacacagaaggtcggtacctcttcttgaatgcaattgcc
aatcagctgcggtatccaaacagccacactcactacttcagttgtaccatgctgtacctt
tttgcagaggccaacactgaagctatccaggaacagatcaccagggttctcttggaacgg
ttgattgtaaataggccacatccttggggtcttctcattaccttcattgagctgattaaa
aatccggcatttaagttctggaaccacgagtttgttcactgtgccccagaaattgaaaag
ttgttccagtctgttgcacagtgctgcatgggacagaagcaggcgcagcaagtgatggaa
gggaccggggccagttag
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integrated database retrieval system
