Sarcophilus harrisii (Tasmanian devil): 105750917
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Entry
105750917 CDS
T02286
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03030
DNA replication
shr03410
Base excision repair
shr03420
Nucleotide excision repair
shr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105750917 (RFC1)
03410 Base excision repair
105750917 (RFC1)
03420 Nucleotide excision repair
105750917 (RFC1)
03430 Mismatch repair
105750917 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shr03032
]
105750917 (RFC1)
03400 DNA repair and recombination proteins [BR:
shr03400
]
105750917 (RFC1)
DNA replication proteins [BR:
shr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
105750917 (RFC1)
DNA repair and recombination proteins [BR:
shr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
105750917 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
BRCT_2
Rad17
AAA_22
RuvB_N
AAA_5
AAA_14
nSTAND3
TCAD2
AAA_33
AAA_16
AAA_30
Motif
Other DBs
NCBI-GeneID:
105750917
NCBI-ProteinID:
XP_031800123
UniProt:
G3VTW5
LinkDB
All DBs
Position
6:complement(27789646..27847876)
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRKFFGVLPSGKKLVNETVKKNENTKTVEGTSKSKKGTKEIKVKTSSKEDDVKGKRSN
KKKRVIYDSDSEPEDTVQVKNAENQSEKLPLSSKPQKILKQDPVTYVSETDEEDEFIYKK
TSLKPKENGISSSSHIGASNGKKAIGKKTQIKNKSLSPIKLTPTSVLDYFGTGSVQRSEK
KLVASKRREPSQNTADSRLSDEAIAEQLQIEENLELERQLHEDEEFARTLAMLDEEPKHK
KARRNSEERETFSSDRINSSESEKHKVKLSNFSYEKNLNKQSKSEDSRGSQPPTKSSPHK
GPDKIEEEPSALKVSSKLALLKKRDESTYQKRESTESGKKNHEVVVKEERQSPKKNKISP
SKTQSVSPEDTEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTSYLVMGRDSGQSKSDKASALGTKIIDEDGLLDLIRT
LPGKKSKYEIAFEAEVKKEKSKLEKTPQKANQGKRKTSPNKKDSESKKNKLSPKKDISMK
SETSEFRRGLNFKQVDGKKKPDLSPEKSVADQSKDKAEGLLWVDKYKPTSLKTIIGQQGE
QSCANKLLRWLRNWHKNMSEDKKHVKAGKFGGKDDGSSFKAALLSGPPGIGKTTTASLVC
GELGYSYVELNASDTRNKSSLKEIVAESLNNTSIKEFCSGSGAAHSGGTKHALIMDEVDG
MAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRIEQIKGAM
MSVAFKEGLKIPPPAMNEIILGANHDIRQVLHNLSMWCAESKALTYDQAKADSSRAKKDV
KLGPFDVARKVFAAGEETAHMTLMDKSDLFFHDYSIAPLFVQENYLHVKPAAAGGDVKKH
LMLLSRAADSICDGDLVDRQIRNKQNWSLLPTQAIYSSVLPGELMRGYMTQFPSFPSWLG
KFSSTGKHDRIVQELALHMSLETHSSKRTVNLDYLSHMRDALVLPLTLHGTEGVQNVVEL
MDTYHLMREDFENIMEISSWGGKPSSFSKLDPKVKAAFTRSYNKEVHLTPYALQGPKAPR
QSTGSSLGLDYSDDLNEDESQLEEKDPDGIETDAMIKKRTKSSKVSKPEKETENKKAKGK
SSKKS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggatattcggaaattctttggggttcttccaagtggaaagaaacttgttaatgagaca
gtaaaaaagaatgagaatacaaagactgttgaaggaacatcaaaatcaaaaaaaggaaca
aaggaaatcaaggtgaaaacttcttccaaagaagatgatgtaaaaggaaagcgttcaaac
aagaaaaagagagtcatctatgattcagattcagagccagaagacacagtacaggtaaaa
aatgctgaaaaccagtcagagaaattgccgctgtcttctaaacctcagaaaattctaaaa
caggatcctgttacatatgtttcagaaacagatgaagaagatgaatttatttataagaag
acatcccttaaaccaaaagaaaatggaatatcttcaagtagtcatattggagcatcaaat
gggaagaaagctattgggaaaaaaactcagattaagaataaatctttgtcaccaataaaa
ctcacacctacatcagtgcttgattactttggaactggaagtgttcaaagatcagaaaag
aaactagttgcaagcaaaagaagagagccttcgcaaaatacagctgattccagattaagt
gatgaagctatcgctgagcagctacaaattgaagagaatttagagcttgagagacaactg
cacgaggatgaagaatttgcccgcactttggcaatgttggatgaagagcccaagcacaaa
aaggcccgaaggaattcagaagagagagagacattttcatctgaccgaattaattcaagt
gaatcagaaaagcacaaagtaaaactgtcaaatttttcatatgagaagaatttgaacaaa
cagtctaaaagtgaagattcaagaggttctcaaccccctacaaagtcatcaccccacaaa
ggacctgataaaatagaggaagaaccttccgctttgaaagtcagctctaaactggcactc
ttgaaaaaaagagatgagagtacttaccaaaaaagagaatccacagagtcagggaaaaaa
aaccatgaagttgtagtaaaagaagagaggcagtctcctaagaaaaataaaatttctcca
tccaaaacacagtctgtaagtcctgaagatactgaaaagaaacgtactaattaccaggct
tatcgaagctacctgaatcgagaaggacccaaagctctaggctctaaggagattccaaaa
ggagctgaaaattgcctggaaggcctgacatttgtaatcaccggagtcctagaatccatt
gaacgagatgaagccaagtctctaattgagcggtatgggggaaaagtgactggaaatgtc
agcaaaaaaacgagttaccttgtaatgggacgtgacagtgggcagtccaagagcgacaag
gcttcagctttgggaacaaaaattattgatgaagatggcctattggatctcattcgaact
ctccctggcaaaaagtccaaatatgaaatagcatttgaagctgaggtaaagaaggaaaaa
tcaaaattggagaaaacaccacaaaaagctaatcaaggaaaaagaaaaacgagcccaaat
aagaaggattctgaatctaaaaagaacaaattaagtcctaaaaaagacatttccatgaaa
tcggaaaccagtgaatttcgaagaggcctcaacttcaagcaggtggatgggaagaagaaa
cctgacttaagtccagagaaatctgttgctgaccaaagcaaagacaaagctgagggtttg
ctttgggtggataaatataagcccacctctcttaagaccataattggacagcaaggtgaa
cagagctgtgctaacaaactcttacgatggctccgcaactggcacaagaacatgtctgaa
gataagaaacatgttaaagctggtaagtttgggggtaaagacgatggctccagttttaaa
gcagccctgctctcaggtcccccggggatcggcaagacaaccacggcttccctggtgtgt
ggggaattggggtacagttatgtggaattgaatgcaagtgacactcggaataaaagcagt
ttgaaagaaattgttgctgagtcgctgaacaacaccagcatcaaagagttctgttcaggc
tcaggcgcagctcattcaggaggcacaaaacacgctcttatcatggacgaagtagacggc
atggcaggctctgaagatcggggtgggattcaggaactgattggcctgatcaaacacaca
aagatacccattatttgtatgtgtaatgatcgaaatcatccaaaaattcgctccttagtg
cattattgctttgatcttcgatttcagaggcctcggattgaacagataaagggtgctatg
atgtctgttgcttttaaagagggtttaaaaattcctcctccagctatgaatgaaattatt
ctgggagcaaatcatgatattcgacaggttttgcacaatcttagcatgtggtgtgcagaa
agtaaagccctaacctatgaccaagctaaagctgattccagcagggccaaaaaggatgtc
aaactgggtccatttgatgttgcccggaaagtatttgctgctggagaagagactgctcac
atgacgcttatggataaatctgatcttttcttccacgattactccatagcacctcttttt
gttcaggaaaactacttacatgtaaaacctgctgctgcaggaggggatgtgaagaaacac
ttgatgcttttgagcagagcagcagacagtatatgtgacggtgacttagttgatagacag
attcgaaataaacaaaactggagccttctgccaacacaggccatttattccagtgttctt
cccggggagttgatgagaggttacatgactcagtttccttcttttccaagttggttgggt
aaattctcatctacaggcaaacacgatcgcattgttcaagaattagcattacacatgagt
cttgaaactcactccagcaaaaggactgtcaacctggactacctttcacacatgcgggat
gcccttgttcttcctttgaccttacatgggaccgaaggtgtgcagaatgttgtcgaactt
atggatacctatcatctcatgagagaagactttgaaaacatcatggaaataagctcttgg
ggaggcaaaccgagttccttctctaaactggatcccaaggtcaaggcggccttcacacga
agctacaataaagaggtgcacttgacgccgtatgcccttcaggggcccaaggcccccagg
cagagcacaggttcgtccctgggcctggactacagcgacgacctgaacgaagacgaatcc
cagttggaggagaaggacccagacggcattgagaccgacgccatgatcaagaaaaggaca
aaatcttcaaaggtttcaaaaccagaaaaagaaacagagaacaaaaaagcaaaggggaaa
agctccaaaaaatcctaa
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