Sarcophilus harrisii (Tasmanian devil): 111721183
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Entry
111721183 CDS
T02286
Name
(RefSeq) collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04151
PI3K-Akt signaling pathway
shr04510
Focal adhesion
shr04512
ECM-receptor interaction
shr04820
Cytoskeleton in muscle cells
shr04974
Protein digestion and absorption
shr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
111721183
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111721183
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111721183
09142 Cell motility
04820 Cytoskeleton in muscle cells
111721183
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
111721183
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
111721183
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shr04147
]
111721183
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
111721183
Exosome [BR:
shr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111721183
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111721183
Hyaluronan
Extracellular matrix or blood plasma proteins
111721183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
vWA_SIBA-E
VWA_CoxE
DUF1194
Motif
Other DBs
NCBI-GeneID:
111721183
NCBI-ProteinID:
XP_031796086
LinkDB
All DBs
Position
5:complement(252646143..252750164)
Genome browser
AA seq
2719 aa
AA seq
DB search
MDVSPPLLWVIFLAATFCPVKPQRNVCQEATVADVVFLVDSSGGPEKSREVQDFLSALVR
GLDVGKDRIRVGLVQSGPSPSTEFALGTSQRKEELLGRIRALTFRDGAPHTGRALRFVLE
SHFREEAGSRARPGVPQLAVLVTGAPARDDVQGPARAARKAGVLLFAVGLPGADFSELRG
IASDPQHKFLFEAAGGSALGDLSQNVLLALCATIVEATQRGAQVSPACRKAAVADLVFLV
DSSTSIGPDNFQKVKSFLYSLVSGLEIGRDQVRVGLAQFNDNIYQAFLLNQFPLKSDVLE
QILNLPYRTGGTRTGSALDFLRTTYFTESAGSRAKDNVPQVLILVTDGESNDEVAQAATR
LKEGGVSIYVVGINVQDVQELETIASKPLEKFLFSTEDFNILEGLSSNILPTLCSAVENQ
MQAFTKSYADVVFLVDTSEGTSPASFHRMKSFIFRVIDMLEIGRDKYQIGLAQYGHQGHV
EFLFNTYQKPDEMITHIQQNFLLRGGARRTGNALQFIQETFFQEKAGSRFLQGIPQYAVV
ITSGQSEDLVLEATQKLKAKGVKIMAVGIQNFDRKELEVMATPSLLFEIEGQDGLKELHQ
DVSQVLESSGRLHFSPEMDEEALAVCTSASVADIVFLVEASSGIGLENFELAIQFLGRTI
HSLNIGPDKVRVGLVLYSEEPRLEFGLDTFLSQSEILSHLNKLPFVGGQTKTGAALDFLR
NTVFTQQKGSRSRQGVQQFAVVITGGSSKDEVDRPASLLRRSGVTLFAVGTQKASENGDL
DKIASYPHRKYAIYLESFLQLSMVRDKIKKRLCTEIVQKTFSVPVMTRTLKEGCVNTEEA
DFYFLIDGSGSIVPEDFKEMKTFMNELISMFHVGADQVRFGVVQYSDYSQTEFNISQHTS
VAQLKRAIGNIEQMEGGTHTGDALRFMKQLFSRVVRDGVPRFLIVITDGKSQDPVAQAAE
ELRQENITIYAIGVKFAITKELVEISGSENRMFFVNDFGSLKHIQEEVIRDICFSEVCKD
MKADILFLVDGSERVRSRDFEKMKEFVRQMVNQSDIGPDKVHVGLLQFSSVPQEEFQLDT
YFSKTDILGAISDMVQMKEDTLLGSALSFASFYFDRPKGGRPNVPQYLILIIDGESKDAV
KTPAKALRDKGIKIFAIGAHKADNSQLLEVTGAQDKVYYEENFDSFLFLEKEIIFRLCNI
EEACKKTEVADILFVVHASSSTSDQELMAIHRLMEAIVNNSLVGKNNVRFGAISYSDNSE
VLFSLDTYITKAQIREAILHLKPKVGKAHTATALKFAKEMFAEMHGGRPSMGITQILVLI
TNRPTEPKERAFLQDSTEALKEADINVFAFGIKSVKRPELHTITRYLDRSFVVQSYDELY
DLHEKVTHVICNESKPICGHQQIDLVFLIDGSLSIHPRNFTAMKTFMKQIVSSFTIGKDK
VRIGVAQYSTDPKKEFYLNAFYSGAEISEHIDKITQLRSKTYTGKGLKFVKSFFEPANGS
RKNLNVLQSLVVITDGMSNDSVVEAANDLRNEKINIFAIGIGVINLFELQAIAGDGKRVF
LVENFGQLGFIERKVVSELCAPSDIINPECTVDISVGLDTSTSARQVQQRLQHLLPDVMQ
RLTGLANVSCGALAPLNIRLRYHVPTPDGQSQFDSGFEKYSEGIIRKFFDQHELMSNSMN
VAFVQSLGEKALSLTSAKVKVLLVFTDGLDYDLERLKETSTFLRLKGLHALLLVGLQSGQ
KLEELQDIEFGRGFGYKQPLSITMQALPSLLLRQLDTVVERECCKVNCKFLGRAGISGER
GGHGRKGETGLNGMPGYPGDEGGPGERGFTGLPGPRGDGGCPGVRGLKGSRGFIGEKGNR
GDNGLDAFTGEEGEPGSSGISGEKGNAGIQGLRGPPGASGDPGSPGLRGDPGDPGTDSNV
WGPQGEKGKPGRQGKPGQHAQGGVPGDRGSNGPRGRKGLPGVQGVPGETGIRGYSGVPGR
PGLEGPRGEQGFPGMAGQQGSPGGQGKPGLQGPVGPKGGTGPRGVKGELGYVGENGVVGP
QGPRGQSGLDGNDGYGHPGRKGAKGDPGFPGYPGVQGEDGDKGQPGNQGSKGFPGKRGNS
GLPGLHGSPGDPGPPGPMGTKGSKGLTDMTTCDIVDFARKNCPCSSDDAKCPAFPTEVVF
ALDMSEGVTESAFERMRDILLLLLRRMSISQNNCPTNARVAVVSYGTKMHYLVRFSDFQN
KNSLLQAIRNIPLEQSAGQRDLGAALRFVARNVFKRIRRGILMRKVAIFLVAGPSSDAAS
ISTAMLEFRALDIIPAVIAFGDDPLLRQALSMDNTKLYVWEKKNDENVELVASCTLCYDW
CKADKECEVTSPGLIEVDMDIAYVLDGSPGVTHEAFRAARSLVDSLLNDLVIAPHPRLSP
AGARAALVQQGVPGFSPYEDEPPVQTEFDLLTYSHPGQMQRHLREAVHQLRGPPYLGHAL
EWTIENILEVAPLPRKNRVLLVIVGSKTSPGDREKLRRVSLEAKCEGFILFVVALGAGAD
LEESALLASSPPEQHLLHLPDVSPLGMDYAQRFLRAFLSLLKSEVNQYPPPSLLEDCERL
HRGDNRRKASLTKRFRFNESDSGRGWKALKTKDPSVEMRRKISQITQTDRDNIEYHYRPE
KNLMEALQKTKETEAETTDLDPCSMTKDAGMCHDYVLKWYYHQDQHTCQQFWFGGCGGNQ
NQFETKQDCESRCVLLAQR
NT seq
8160 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtcgccacctttgctttgggtcattttcttggcagctaccttctgcccagtc
aagccacagagaaatgtctgtcaggaggccacagtggccgacgtggtgttcctggtggat
tccagcggaggcccagaaaaatcccgagaagtccaggacttcctgtccgcgctggtccgc
ggcctcgacgtgggcaaagacagaatcagagtaggcctggtgcagtccggcccctcgccc
agcacggagtttgccctcggcacctcccagcgcaaggaagagctcctgggccgcatccgg
gccttgacgttccgggacggcgctccccacaccggccgggccttgcgcttcgtgctagag
agtcactttcgggaagaggccggcagccgggcgcgcccgggggtcccgcagctggccgtg
ctggtcacgggggcgccggcacgggatgacgtccaggggccggccagggcggccaggaag
gcgggcgtgctgctgttcgccgtcggcctcccgggggccgatttctccgagctccggggg
atcgccagtgatccccagcacaagtttctcttcgaagccgcggggggttctgccctaggg
gacctttcccaaaacgtgttgctggccctctgcgccacaatcgtggaggcgactcagcgc
ggcgcccaggtctctccagcctgcagaaaagcagccgtagctgacctggtcttcttggtg
gacagctccacgagtataggcccggacaatttccagaaagtgaagagcttcctttactca
ctggtttcaggccttgagatcggcagggaccaggttcgggttggcttggcccagttcaat
gataacatctaccaggcgtttctgctcaatcagttccctctgaagagtgatgtgctggag
cagattttaaatctcccttaccgaactggagggacccgaaccgggagtgccttggacttt
ctcaggacaacctatttcactgaatcagcaggcagccgggccaaggacaacgtccctcag
gtactgatcctggtgacggacggggagtccaatgatgaggtggcccaggcggccaccagg
ttgaaggaaggaggcgtgtccatctatgtggtgggaatcaatgtccaggatgtccaggag
ctggagacaatagctagcaagcccttagagaagttcctttttagcacagaagacttcaac
atcctcgagggtctctctagcaacattcttcctaccctgtgctcagcagttgagaaccag
atgcaagcattcaccaaatcctatgctgatgtggtcttccttgtggatacctcagagggc
acgtccccagccagtttccatcgtatgaaaagttttattttcagagtcatcgacatgcta
gagattgggcgcgacaagtatcagattgggctggcccagtatggtcaccaaggtcatgtt
gagtttttgttcaacacctaccagaagccagatgagatgatcacccacatccagcagaat
ttcctactccgaggaggtgccaggaggacagggaatgcccttcagttcatacaggagact
tttttccaggagaaggcagggagccgctttctccagggcatccctcagtatgcagtggtc
atcacatctgggcagtctgaagacttggtcttggaagccactcagaagcttaaggcgaag
ggagtaaagatcatggcagttggtatacagaactttgatagaaaagaattggaggtcatg
gctactccttcccttctctttgagattgagggacaagatgggctcaaggagcttcaccag
gatgtcagccaggtgttggaaagctctggccggttgcacttcagtcctgagatggatgaa
gaagccttggcagtgtgtacgagtgcttctgtggctgacattgtgttccttgttgaggcg
tcaagtggaatcgggttggagaattttgagctggccatacagttcctggggagaaccatc
cactctctaaatattggccctgacaaggtcagagttggtctggtactttacagtgaggag
ccgaggcttgagtttggcctggatacgttcctgagccaatcagaaatcttgagccacttg
aacaagttgccattcgtaggtggccagaccaagacgggagctgctctggacttcctcagg
aacactgtgttcactcagcagaagggtagccggtctagacaaggagttcagcaatttgct
gtggtcatcacaggaggctcttccaaggatgaggtggacaggccagcttctctcctccgg
cgctctggggtcacactctttgcggtgggcacccaaaaagcttcagaaaacggtgacctg
gacaaaatagcctcctatccacatcggaaatatgctatctacctggaatcattcctgcag
ctctcaatggttagagacaagataaagaaacgtttgtgcacagagatcgtgcaaaaaacc
ttttcagttccagtgatgactcgtaccctgaaagaaggctgtgtaaacacggaggaagcc
gatttctatttcctcattgacggatcaggcagcatagtccctgaagacttcaaggagatg
aaaacattcatgaatgagctgataagcatgttccatgtgggtgcagaccaagtgcggttt
ggggtggtccagtactcagactattcccagaccgagtttaacatcagccagcacaccagc
gtggcccagctgaagagggccattggaaacatcgagcagatggaaggtggcacccacacg
ggagatgccctgagattcatgaaacaacttttttcaagggtcgtcagggatggagtccct
cgatttctcatcgtcataactgatgggaagtcccaggacccagtggcccaggctgcagag
gaactgaggcaggaaaacattaccatctatgctattggtgtgaaatttgctatcaccaag
gagctggtggagatttctggctcggaaaataggatgttttttgtgaatgactttggttct
ttaaagcatattcaggaagaagtcatccgggacatctgcttctcagaggtgtgtaaggat
atgaaagcagacattcttttcttggtcgatggctctgagagggtccgctctagagacttt
gagaagatgaaggaattcgtgaggcagatggtgaaccagtcggatatcggccctgacaaa
gtacacgttgggctcttgcagttcagttcagtcccccaggaggagttccaacttgacact
tacttctctaagacagacattcttggagccatttctgatatggtacaaatgaaagaagat
accctactggggagtgccctttccttcgcttctttctactttgataggccaaagggagga
agacctaatgtaccccagtatttaatcctgatcattgatggggaatccaaggatgctgta
aaaacaccagccaaggccctcagagataaaggaatcaagatctttgccattggagcacat
aaggccgacaattctcagctgttggaggtcacaggtgcccaggacaaggtgtattatgag
gaaaatttcgattccttccttttcttggaaaaggagataatttttagactctgcaatata
gaggaggcttgcaaaaagacagaagttgcagatatcctatttgtggtgcatgcatctagt
agcacctctgaccaagagctcatggccattcacagactcatggaagccattgtcaacaac
tcactggttggaaagaacaatgtgagatttggagcaatttcctatagtgataattcagaa
gtacttttttcactggatacctacattaccaaagctcagatcagggaagccattttacac
ctgaaacccaaggtgggaaaagcccacacagccacggctttaaagtttgcgaaggaaatg
tttgccgagatgcatggaggtcgcccatccatgggtatcacccaaatcttggtgctcatt
accaacaggccaactgagcctaaagaaagagcgtttttacaagactcaacagaggctctg
aaagaagctgatattaatgtctttgcctttggaataaaaagtgtcaagagaccagaactt
cacactatcacaagatatctagatagatcatttgtggtgcagagttatgatgaactttat
gatttgcatgaaaaagtgactcatgtcatatgtaatgaatcaaaaccaatttgtggccat
cagcagatagacctcgtgttcctgattgatggatccttgagcatccatccccggaacttc
actgctatgaagacctttatgaagcaaatagtgagcagtttcaccattggcaaggataag
gtgcgcattggggtcgctcagtatagcactgatcctaagaaagaattctacctcaatgct
ttctactctggtgccgaaatcagtgaacacatcgacaagattacccagctgagaagtaaa
acatacactggcaaaggactgaagtttgtcaagagtttttttgaacctgccaatgggagc
cggaagaacctcaatgtattacagagcctagtagtcattaccgatgggatgtccaatgat
tcagtcgtggaagcagcaaatgacttgagaaatgaaaaaatcaacatttttgccatcggt
attggagtcatcaatctctttgaacttcaggccattgctggtgacgggaagagggtcttt
ttggtggagaactttggacaactgggctttatcgagaggaaggttgtcagtgagctctgt
gcacccagcgacattattaatcctgaatgcactgtagacatctcagtgggactcgacact
tccacttcggcccgtcaggtgcagcagcggctgcagcacctgctgccggacgtgatgcaa
aggctgaccgggctggccaatgtcagctgtggggccctcgccccgctcaacatcaggctg
cgctaccatgtgcccacccccgatggccagtcccagttcgactcgggatttgagaagtac
agtgaagggatcatcaggaagttctttgaccagcatgagctgatgagcaactctatgaat
gtggcttttgtgcagtcccttggggagaaggctctcagcttgacttctgctaaagtgaag
gttctcttagtatttacagatggattagattacgatttggaaagactaaaagaaacttca
acgttccttcgtcttaaaggtcttcatgcacttctattagttggcttgcaaagtgggcag
aagttagaagaacttcaggatattgaatttggccgaggatttggttataaacaacctctg
agtatcacaatgcaagctcttccaagccttttgctgagacaacttgacacagttgtagaa
agagaatgctgtaaggtcaattgcaaatttttggggagagctggtatttcaggagaacga
gggggccatggaaggaagggagagacaggtcttaatggcatgcctggctatcctggtgat
gaaggtggacctggagaacgaggcttcactggcttgccaggacctcgtggtgatggagga
tgccctggtgtaagagggcttaagggatcaagagggtttataggagaaaagggcaaccgg
ggtgacaatggattggatgcgtttactggagaagagggtgaacctggcagttctggaatc
tctggagaaaaaggaaatgctggaattcagggcttgaggggccctcctggagcatctggt
gacccaggaagtcctggtctgagaggagatcctggagatcctggaactgatagcaatgtt
tggggtcctcagggagaaaaaggaaaaccaggtcgccagggaaaaccggggcaacatgct
cagggaggcgtgcctggagaccgaggttctaacggcccaagaggtagaaagggtctacct
ggagtacagggtgtgcctggagaaactggtatacgtggctacagtggagttcctggacgt
ccaggcttggagggtccaagaggtgaacaaggattcccaggaatggctggacaacagggc
tcaccaggaggacaggggaagccagggctgcaaggcccggttggtcctaaaggaggcact
gggcccagaggagtgaagggggagcttggttatgtcggagaaaatggagtggtgggaccg
caaggaccaagagggcagtctggtttggatggcaatgatggatatggccatccaggaaga
aaaggagctaagggtgaccctggcttccctggatatcctggtgtacaaggggaagatggt
gataaaggtcaaccaggaaaccaaggatcaaagggttttccagggaaaaggggaaattct
ggcttacctgggctacatggatcaccaggagatccagggccacctggaccaatgggcacc
aagggatcaaagggattgacagacatgacgacttgtgacattgttgactttgcacggaaa
aactgcccttgttcatcagatgatgccaaatgtccagcgttcccaactgaggtggtcttt
gctctggacatgtctgaaggtgtcacagagtcagcatttgagaggatgagggacattttg
ctgttactgttaagacggatgagcatcagccaaaacaactgtccaaccaatgcccgggtg
gccgttgtctcatacggtaccaaaatgcattacttggtccgcttctcggactttcagaac
aagaactcactcctccaagccatcaggaacatacctttggaacagtcggcgggacagcgg
gaccttggcgctgccctgagatttgtggccagaaatgtcttcaaacgcattcgccggggc
atcctcatgaggaaggtcgccatctttctggtggcgggcccgtcctctgatgctgcttcc
atcagcacggccatgctggagttcagagccttggacatcattcctgctgtgatcgccttc
ggtgatgatcccctcttacggcaggccttgtcgatggataatacaaagctgtatgtgtgg
gaaaagaagaatgatgagaatgtagagcttgtggcctcctgcactctttgctacgattgg
tgcaaagctgacaaggagtgtgaggtgaccagccccggtctcatcgaagtggacatggac
atagcctatgtgctggacggctcccccggggtcacccatgaggccttcagggcagcccga
agcctggtggactccttgctgaatgacttggtcatcgctccacaccccaggctctcacct
gctggggccagggccgccctggtgcagcagggggtcccaggcttctccccttacgaggac
gagccccccgtccagacggagtttgatttgctcacgtacagccacccagggcagatgcag
aggcacctgcgggaggctgtccaccagctcagagggcctccttatctgggtcatgccctg
gagtggactattgagaacatcctcgaggtggctcccctgcccaggaagaaccgggtcctc
ttggtgatagtgggcagcaagaccagtcccggggacagggagaaactccgcagggtctct
ctggaggccaagtgtgaaggcttcatcctctttgttgtggccttgggcgccggagccgac
ctggaagaatcggccctgttggccagctcccccccggagcagcacctgctgcacctgccc
gatgtctctcctctgggaatggattacgcccagcgcttcctccgagccttcctgagcctt
ctgaaaagtgaggtaaaccagtacccacctccctcacttctagaagactgtgagagactc
catcgaggggacaaccggagaaaggcctccttgaccaagaggttcagattcaatgagtcg
gactctggaagaggctggaaggcacttaagacaaaagacccttctgtagagatgaggaga
aaaatttcccaaatcacccaaactgacagagataacattgaatatcattatagacctgaa
aaaaatctaatggaagccctgcaaaagaccaaagaaactgaagctgagaccactgacctt
gacccttgttccatgactaaggatgccgggatgtgtcatgactatgtcttgaagtggtac
taccatcaggaccagcacacctgccagcagttctggtttggtggctgtggtggcaaccaa
aaccagtttgaaaccaagcaagactgtgagtcccgctgtgtgctattagcccaaagatga
DBGET
integrated database retrieval system
