Sarcophilus harrisii (Tasmanian devil): 111721301
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Entry
111721301 CDS
T02286
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
111721301 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
shr00536
]
111721301 (COL25A1)
Glycosaminoglycan binding proteins [BR:
shr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111721301 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111721301
NCBI-ProteinID:
XP_031799259
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Position
6:129010354..129539081
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AA seq
692 aa
AA seq
DB search
MLGKNQVVKGEHDGAEKSSSSPGQRCLRIVAPCSLLPIVLSLMCMIACLYLGVKTNDLQA
RISAIEATKGELPYQHLPASLDQMEAVMQEKIERLLSQRSYEHLAKVRIARESPLECNCP
AGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQL
IKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPQGP
PGQKGSIGAPGTPGMDGKMGEPGLPGTVGQNGTPGLKGDAGERGEKGDAGESGPKGDMGE
KGDPGSSAAGIKGEPGESGHPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTK
GERGEAGSPGRGERGEPGVPGPKGKQGESGVRGPKGSKGDRGDKGDSGALGPRGPPGQKG
DPGATEIIDYNGNIHEALQRITTLTVTGPPGPPGPQGLQGPKGEPGSPGTPGVDGEQGPK
GSKGDMGDSGQPGEKGGIGLPGLPGANGMKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPG
PMGPHGLPGPKGEPGLNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPIGPHG
PAGPKGERGEKGAVGEPGPRGTYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKG
EKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgctggggaagaaccaagtagtgaagggagaacatgatggggccgaaaaatccagctcc
tctccgggacagcgctgcctcaggattgtagccccctgctccctactgccaattgtgctg
tccttgatgtgtatgattgcctgcctgtacctgggggtgaaaaccaacgacctacaagca
aggatttcggccatcgaggcaaccaaaggggaacttccttatcagcatctgccggcttca
ttggaccaaatggaagcagtgatgcaagaaaaaatagaacgacttctgtctcagagatcc
tatgagcatttggctaaagtaagaatcgccagagaatcacctctagagtgtaactgtcca
gcaggacctcctgggaaacgtggtaaaaggggcagaagaggagaatctggtcctcctggt
cagccaggtccacagggccctcctggtcccaaaggtgacaagggagatcaaggggatcag
ggccctcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctc
attaaacgccgcctcattaagggtgaccaaggacaagctgggcctcctggacctcctggc
ccaccaggacccagagggcctcctggggacacagggaaagatggtccccgggggatgcca
ggagtacctggtgaaccaggaaaaccaggagaacaaggcttaatgggacctcaagggcct
ccaggacaaaagggttctattggagcacctggaactccaggaatggatgggaaaatgggt
gaacctggcttacctggaacagtggggcagaatggaacacctgggcttaagggcgatgct
ggagagcgaggagaaaagggagatgctggagagagtggacccaaaggtgacatgggtgaa
aagggtgatcctggatcttctgctgcaggaattaagggagaacctggagaatctggtcat
ccaggacaaaagggtgaaccagggctgcctgggctgcctggacttccggggataaaggga
gaaccaggtttcattggtccacagggagaaccagggttaccagggttacctggaacaaag
ggtgaacgtggagaggctggatctcctgggagaggtgagcgaggtgaacctggagttcct
ggaccaaaggggaaacaaggtgaatcaggagttagaggtcccaaagggtcaaagggtgat
cgtggagacaaaggtgactctggagctctgggaccaagaggtcctcctgggcaaaaggga
gatccaggagcaacagaaatcatagactacaatggcaatattcatgaggccttgcagagg
attaccaccttaactgtcacgggacccccaggacctcctggaccacaaggattacaggga
ccaaagggtgagccaggatctccaggaacaccaggagttgatggtgaacagggtcctaaa
ggttcaaagggcgacatgggagattcaggtcagccaggtgaaaagggaggaattggactt
cctggattaccaggtgccaatggcatgaaaggagaaaaaggagattctggtttaccgggt
cctcaggggccttctatcatcggcccaccaggcccacccggcccccatggtccaccaggt
ccaatgggaccccatggacttcctgggccaaagggtgaaccagggttaaatggtcttaaa
ggattgaaaggtgaaccaggtcaaaagggtgacagaggaccccttggtcttccaggagcc
tctggcttagacggaaagccaggatcccggggtacagatggccctattggaccccatgga
cctgcaggtcctaaaggagaaagaggtgaaaagggagctgttggagagcctggacccaga
ggaacttatggtttgcctgggaaggatggagaacctggtcttgatggttttcctggtcct
cgaggagagaagggtgatttaggagagaaaggagaaaagggattccgtggagttaagggg
gaaaaaggggagccaggtcagcctggcctggatgggctggatgccccttgccaattgggg
ccggatggattaccaatgcctgggtgctggcaaaagtga
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