KEGG   Stereum hirsutum: STEHIDRAFT_100125
Entry
STEHIDRAFT_100125 CDS       T03127                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
shs  Stereum hirsutum
Pathway
shs03018  RNA degradation
shs03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shs00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    STEHIDRAFT_100125
  09123 Folding, sorting and degradation
   03018 RNA degradation
    STEHIDRAFT_100125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shs03019]
    STEHIDRAFT_100125
   03041 Spliceosome [BR:shs03041]
    STEHIDRAFT_100125
Messenger RNA biogenesis [BR:shs03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     STEHIDRAFT_100125
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     STEHIDRAFT_100125
Spliceosome [BR:shs03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    STEHIDRAFT_100125
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18794360
NCBI-ProteinID: XP_007306215
JGI: Stehi1_100125
LinkDB
Position
Unknown
AA seq 130 aa
MLPLSLLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECY
IRGSTIKYIRVPETLLDVVKEEQLRAREAGKSQRGGLNDRGRGRGGLPQRGGRGAPRGGP
IRGRGRGRGM
NT seq 393 nt   +upstreamnt  +downstreamnt
atgttgccactatcacttctcaatgctgcgcagaataaacctatgcttgtcgaactcaag
aacggggagaattttaacggtcatcttgtcaactgtgacaacttcatgaatatcacactc
cgagaagtgtaccagacaagtgcagatggcgagcggttttggaaggtcaaggagtgttac
attcgtggctcaacaattaaatacatccgtgtcccagagacactccttgacgtcgtgaaa
gaggaacagctccgcgcacgagaagcaggcaagtctcaacgaggaggcctcaacgaccgc
ggtcgtggacgtggcggtctcccacaacgagggggccgtggtgcaccacgaggcgggcca
attcgtggacgtggacgaggacgggggatgtaa

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