Stereum hirsutum: STEHIDRAFT_100125
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Entry
STEHIDRAFT_100125 CDS
T03127
Name
(RefSeq) Sm-like ribonucleo protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
shs
Stereum hirsutum
Pathway
shs03018
RNA degradation
shs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
STEHIDRAFT_100125
09123 Folding, sorting and degradation
03018 RNA degradation
STEHIDRAFT_100125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_100125
03041 Spliceosome [BR:
shs03041
]
STEHIDRAFT_100125
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
STEHIDRAFT_100125
mRNA degradation factors
5'-3' decay
Lsm complex
STEHIDRAFT_100125
Spliceosome [BR:
shs03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
STEHIDRAFT_100125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18794360
NCBI-ProteinID:
XP_007306215
JGI:
Stehi1_100125
LinkDB
All DBs
Position
Unknown
AA seq
130 aa
AA seq
DB search
MLPLSLLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECY
IRGSTIKYIRVPETLLDVVKEEQLRAREAGKSQRGGLNDRGRGRGGLPQRGGRGAPRGGP
IRGRGRGRGM
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atgttgccactatcacttctcaatgctgcgcagaataaacctatgcttgtcgaactcaag
aacggggagaattttaacggtcatcttgtcaactgtgacaacttcatgaatatcacactc
cgagaagtgtaccagacaagtgcagatggcgagcggttttggaaggtcaaggagtgttac
attcgtggctcaacaattaaatacatccgtgtcccagagacactccttgacgtcgtgaaa
gaggaacagctccgcgcacgagaagcaggcaagtctcaacgaggaggcctcaacgaccgc
ggtcgtggacgtggcggtctcccacaacgagggggccgtggtgcaccacgaggcgggcca
attcgtggacgtggacgaggacgggggatgtaa
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