Stereum hirsutum: STEHIDRAFT_118880
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Entry
STEHIDRAFT_118880 CDS
T03127
Name
(RefSeq) replication factor-a protein
KO
K07466
replication factor A1
Organism
shs
Stereum hirsutum
Pathway
shs03030
DNA replication
shs03420
Nucleotide excision repair
shs03430
Mismatch repair
shs03440
Homologous recombination
shs03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STEHIDRAFT_118880
03420 Nucleotide excision repair
STEHIDRAFT_118880
03430 Mismatch repair
STEHIDRAFT_118880
03440 Homologous recombination
STEHIDRAFT_118880
03460 Fanconi anemia pathway
STEHIDRAFT_118880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shs03000
]
STEHIDRAFT_118880
03032 DNA replication proteins [BR:
shs03032
]
STEHIDRAFT_118880
03400 DNA repair and recombination proteins [BR:
shs03400
]
STEHIDRAFT_118880
Transcription factors [BR:
shs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
STEHIDRAFT_118880
DNA replication proteins [BR:
shs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
STEHIDRAFT_118880
DNA repair and recombination proteins [BR:
shs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
STEHIDRAFT_118880
MMR (mismatch excision repair)
STEHIDRAFT_118880
DSBR (double strand breaks repair)
HR (homologous recombination)
STEHIDRAFT_118880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
RADX
DUF223
Phi6_P8
HROB
Motif
Other DBs
NCBI-GeneID:
18796378
NCBI-ProteinID:
XP_007300892
JGI:
Stehi1_118880
LinkDB
All DBs
Position
Unknown
AA seq
596 aa
AA seq
DB search
MDAIPQLTEGACARFHSGDKDDEQLWSSSPIVQLLSIKKVSASQGHDRYRVIISDGVNFI
QSMLATQLNSLVEADTITKNTICKLTNMSCNVIQNKRLVVVLGLSVVQKDAEKIGNPAAF
PTDEATTPAASNITPTSAPSATTTPSVPQQPRQQQSSRGTRNNIFPIEGLSPYQNNWTIK
ARVIQKSDIRTYSNQRGEGKFFNVTLMDDSGEIKGTGFNAVADELYDKLVEDKVYYISKA
RVNLSKRKFSSAQEYELSLERNTEIEECHDTSNLPVVKYNFIELGNLEELPKDSICDVIG
VVKDVSEVSEIQTKTQRTLSKRELTLVDSSAFSVRLTLWGKQAEQYNASPNSVIAFKGVK
VGDFGGRSLSMFSSSTMAINPDMPEAHNIRGWYDDIGTSTQFQAHTSSMTSAGTGGTINR
SEMRTLNDVKESQLGSSDKVEYFSCRATVMHIRGENISYPACGTEGCSKKVVEGHDGWRC
EKCDRSFETPTYRYMIQMAVADYSGQAWLSGFNDVGLIVFGMTANELHDIKERDDAIYTA
ILQKATCNTYNFACRAKQDTFNDTTRIRYGISRIQPLNYEEETQSFVDLLKSPWAQ
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggacgccatcccacaacttactgaaggtgcttgcgcccgtttccactctggtgataaa
gacgacgagcagctctggtcatcgagcccgatagtccagcttttgtctatcaagaaggtc
tccgcgtcccaaggccacgaccgctaccgcgtcatcatatccgacggcgtcaacttcatt
caatctatgcttgctacccagctgaatagtctcgtcgaagcggatacgatcacgaagaac
accatctgtaaacttacaaacatgtcgtgcaatgtcatccagaacaaacgactcgttgtt
gtgttggggctgagcgtcgttcagaaggatgctgagaagattggcaaccccgctgcgttc
cccaccgacgaagccacgactcccgccgcaagcaatattacccctacatctgccccctca
gccaccacgactccatcagtacctcaacaaccgcgccagcagcagtcgtcccgtggcacc
cgtaataacatctttcccatcgaaggtctcagtccgtatcagaacaactggactatcaag
gcacgcgtcattcagaagtccgacattcggacgtactcgaatcaacgtggcgagggtaaa
ttcttcaatgtcactctcatggatgactctggcgagatcaagggcactgggttcaatgcc
gtggcagacgaactctacgacaaacttgtggaggataaagtctactacatctccaaggct
cgggtgaacctctcgaagaggaagttctcctctgcccaagagtacgaactcagtttggag
cgtaacactgagattgaggagtgtcacgacacatctaatcttcctgtcgttaaatacaac
ttcatcgaactcggaaatctggaggagctccccaaggactccatttgcgacgtcattggg
gttgtgaaagacgtcagcgaagtttccgagattcaaacaaagacgcaacgcactctttcc
aaacgcgagcttactcttgtcgattcttcggcattctctgttcgtctcacgctctgggga
aagcaagccgagcaatacaatgccagtccgaactctgtgatcgcgttcaagggcgtcaaa
gttggtgacttcggaggtcgttccctctccatgtttagctctagcactatggcgatcaac
cccgatatgccagaggcgcacaacatccggggttggtacgatgatattggcacctccacg
cagttccaagcccacacctcgagcatgacctcggcgggcactggcggtaccatcaatcgc
tctgagatgcgcaccttaaacgatgtgaaggagtcgcaattgggctcgagcgataaggtt
gaatacttctcgtgtcgtgcgacggtcatgcatatccggggagagaacatctcgtaccct
gcttgtgggaccgaaggctgtagcaaaaaggtagtggaaggacatgatggatggaggtgc
gaaaagtgcgataggagcttcgagacaccaacctatcgttacatgattcagatggccgtg
gcagactattcgggccaggcctggctgtccggcttcaacgatgttggtctcatcgttttt
ggcatgacagcgaatgaattacatgacatcaaggagcgggacgatgcaatctacactgcc
attttgcagaaggctacttgcaacacctacaacttcgcgtgtagagccaagcaggacact
ttcaacgatacgaccaggattcgttatgggattagtcgcatccagcccttaaactacgag
gaagaaacacagtctttcgtcgacttgctcaagtcgccttgggctcagtag
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integrated database retrieval system
