Stereum hirsutum: STEHIDRAFT_129084
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Entry
STEHIDRAFT_129084 CDS
T03127
Name
(RefSeq) spliceosome complex protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
shs
Stereum hirsutum
Pathway
shs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
STEHIDRAFT_129084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_129084
03041 Spliceosome [BR:
shs03041
]
STEHIDRAFT_129084
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
STEHIDRAFT_129084
Spliceosome [BR:
shs03041
]
Complex B
Other components
Prp19-related factors
STEHIDRAFT_129084
Complex C
STEHIDRAFT_129084
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_15
NRDE-2
ARM_TT21_C
TPR_5
Motif
Other DBs
NCBI-GeneID:
18797980
NCBI-ProteinID:
XP_007301220
JGI:
Stehi1_129084
LinkDB
All DBs
Position
Unknown
AA seq
1005 aa
AA seq
DB search
MPSAVKTTSNFESLAGHFPLTLPVPTPVTHPDLVSPKDLHREEDLLRNPFSFRHWWTAIH
STRDAHIALQKAEKQPDIPPEVAALLGPLASPIARKALQRLTYLYEAALVQFPGSFKLWK
SYLQTRMGYVLGKQISKKRSGGRKKFPEMRDALEEEQEDLEQWEGGLDGVVGWEEWKALA
ATFERCLMWLPKMPRIWLMYLSIFNHPNCPPVLSHTHARRTFDRALRTLPPSLHHRIWVR
YLLWAESKGGATTVSVYRRYLAIDPSITERYTALLLSPSNPSPRPLEAAKLLLSLARKAA
RGEYTSPEGKSPYQLLGEWLNVVEANAEAVGLSLEDTIRVTEEEEKLKVEEDEGKTDDAS
QKPSGSEPVSVKGQLIRFAGPPVAVTPEGKPAPAYDEDEDPTSSRKLDVEKIVRVDGLAV
YKDQAGRLWSGLASYWLRRAEFARAKQTFETGIASVLTIRDFTQIFDAYAEFSETVINSL
MEALAEEADEDDDEEIDKEAVEKELDVNMKEFEDLMDRRPFLVNDVLLRRNPHDVQEWEK
RVALWGDNDEKVAETYTNALSTVNPRKATANFHRLYINFAKFYEEGGVSGQAEPDLGSAR
KVLEKATKVNFKTVEDLAEIWCEWAELEVRHENYDEAIRVMQRAAAIPKNPKINYHDHAL
SVQARLFKSLKLWSFYVDLEESLGTVETAKAVYDKILELRIANAQVIVNYAAFLEENKYF
EESFKVYERGIELFTFPVSFEIWNIYLAKFVKRYGGSKLERARDLFEQALEKCPPKSCKS
IFLMYATLEEEHGLAKRAMSIYDRATQVIDDKDKFEMFTIYIAKAASNYGLPATRPIYER
ALEVLPDRQTAQMCMRFASLERKLGEIDRARAIYAHASQFCDPRVNPEFWAEWHAFEIDT
GSEDTFREMLRIKRSVQARYNTESSYLAAQTMAARQGNSPGAGTGREEVADPMAAAEKQA
GGGKAGPAFVAAKTNPIRSTEEIKVDAAPAGNDEEIHISDDDEDM
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagctgtgaagacgacgtctaacttcgagtcccttgcgggccacttccctctc
acgctgcctgtgccgacgccagtcacccacccagaccttgtctcgccgaaggatctccac
cgcgaggaggacctcttacgaaacccattttctttccgtcattggtggactgctatccac
agcacacgcgatgcacacatcgctcttcaaaaggctgaaaagcagccagacatcccacca
gaagtcgccgctctcctaggtcctcttgcttcacccattgcccgaaaggcgcttcagcgc
ttgacgtatctttatgaggctgctctcgtgcaattccctgggtcgttcaagctgtggaag
tcgtatctgcagactaggatggggtatgtcttgggcaagcagataagtaagaagaggtca
ggtgggagaaagaagttccctgaaatgagggacgcgttggaggaggagcaggaggatctc
gagcagtgggagggaggtttggatggtgttgtgggttgggaagagtggaaggctcttgcc
gcgacttttgagcggtgcctcatgtggcttccaaagatgccacgaatatggctgatgtac
ctctccatattcaaccacccaaactgtccaccagtcctatctcatacacacgcacgccgt
accttcgaccgcgctctccgcaccctcccaccatctctccaccaccgcatctgggttcgt
tatctactttgggcggaatcaaaaggtggtgcaacgaccgtttctgtgtatcgtcgatac
ctcgcaatcgaccccagcatcaccgaacgctacaccgctcttcttctctccccaagcaac
ccttccccacgacctctcgaagccgccaaactccttctgtccctagctcggaaagctgct
cggggcgaatacaccagtccagaggggaagagcccctaccaacttcttggagagtggttg
aacgttgtcgaagccaacgcggaggccgtcgggctgagtctcgaggacacaatacgtgtt
actgaggaggaagaaaagctcaaggttgaggaggacgaaggcaaaactgacgacgcctcg
cagaagccatcaggatcagaacctgtctcagtcaagggtcagctcattcgttttgccggg
ccgcctgtggctgtcaccccagaaggaaaacccgctcccgcatacgacgaggacgaggac
cccacaagctctcgcaagctcgacgttgaaaaaatcgtccgtgtcgatggtctcgcggtc
tacaaagaccaagctggccgtctctggtcaggcttggcgtcctattggttgagacgcgct
gagtttgctcgcgcgaagcagacgttcgagactgggatcgcgtcagtcctgactatccgg
gacttcactcagatcttcgatgcatatgccgaattcagcgagacggtgatcaactcgttg
atggaggctttggcggaggaggccgatgaagatgacgacgaggagatcgacaaagaagct
gtcgagaaggaattggatgtgaacatgaaggagttcgaggacttgatggaccggagacca
ttcttggtgaatgacgtcctgctgagacggaatccgcatgatgttcaggagtgggagaag
agggtagctctatggggtgataatgacgagaaggtcgcagagacttacacgaatgcattg
tctaccgtcaacccgcggaaagccaccgcaaacttccaccgactttatatcaactttgcc
aagttctatgaagagggtggcgtaagcggccaggcagagcccgatcttgggagcgctcgt
aaagttttggagaaggcaactaaggtcaacttcaagacggtggaggaccttgcggagatc
tggtgtgagtgggccgaactggaggtccggcacgagaactacgacgaagcgatccgtgta
atgcaacgagccgccgctatcccgaagaacccgaagatcaactaccacgatcatgctttg
tctgtacaagctcgtttgttcaagtcactcaaactctggtccttctacgtcgatctcgaa
gagtcacttggcacagtagaaactgccaaagctgtctacgacaagatccttgagcttcgc
atcgcaaatgctcaagtgatcgtcaattacgctgcgttcctcgaggagaacaagtacttt
gaggagagctttaaggtatacgagcgaggcattgagctcttcacgttccccgtgtccttc
gagatctggaacatctacctcgcgaagttcgtcaagcgatacggtggctccaaactggaa
cgtgctcgtgatctattcgagcaagcactcgagaagtgccctccaaaatcgtgcaagtcc
atcttcctcatgtatgccacccttgaagaagaacatggcctcgcaaaacgagctatgtcc
atctacgatcgtgccacacaagtcatcgacgacaaggacaagttcgagatgttcactatc
tacatcgccaaggccgcctcgaactacggcctgccagccactcgtcctatctacgaacgc
gccctcgaagtcctccccgaccgtcagaccgcccaaatgtgcatgcggttcgcctctctg
gaacgcaaactcggcgaaatcgaccgtgctcgcgccatctacgcacacgcctcccagttc
tgcgatcctcgtgttaaccccgaattctgggcggaatggcacgcgttcgagatcgatacg
ggctctgaggatacgttccgggagatgctcaggatcaagcggagtgtgcaggcgaggtac
aataccgagtcgagctatcttgcggctcagacgatggcggcgcgtcagggtaattcgcca
ggtgctggtactggtagagaagaggtggcggatccgatggcggcagcggagaagcaggcc
ggtggagggaaagctggaccagccttcgtggctgcgaagaccaacccgatcaggagcact
gaggaaataaaggtggatgctgcacctgctggaaacgacgaggagattcatatatctgac
gatgacgaggatatgtga
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integrated database retrieval system
