Stereum hirsutum: STEHIDRAFT_160081
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Entry
STEHIDRAFT_160081 CDS
T03127
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
shs
Stereum hirsutum
Pathway
shs03013
Nucleocytoplasmic transport
shs03015
mRNA surveillance pathway
shs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
STEHIDRAFT_160081
09122 Translation
03013 Nucleocytoplasmic transport
STEHIDRAFT_160081
03015 mRNA surveillance pathway
STEHIDRAFT_160081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_160081
03041 Spliceosome [BR:
shs03041
]
STEHIDRAFT_160081
Enzymes [BR:
shs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STEHIDRAFT_160081
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
STEHIDRAFT_160081
Spliceosome [BR:
shs03041
]
Complex C
Other components
EJC/TREX
STEHIDRAFT_160081
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
STEHIDRAFT_160081
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18801635
NCBI-ProteinID:
XP_007307600
JGI:
Stehi1_160081
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MSSHDNEELIDYEDEQDVVPNGAAAPASNGAAVTAADGDDKDKKNFSGIHSTGFRDFLLK
PELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGE
VSVIVLCHTRELAFQIKNEYTRFAKYMPDVRVVTFFGGTPVSKDAELLRDKTKCPHIVVA
TPGRLNALVRDKVMDAKNVKHFVLDECDKMLEQLDMRRDVQDIFRSTPHHKQVMMFSATL
AKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHFVKLEEVGKNRKLNELLDTLEFNQVV
IFVKSVARAIELDKLLVSCNFPSISIHSGLAQEERISRYQAFKAFEKRILVATDIFGRGI
DVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGLAITFQSSEADQQVMATIQSRFEVAI
PELPEHIDPASYMTS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagctctcacgacaacgaggaacttatcgactacgaggacgagcaggatgtcgtcccc
aatggcgcagcggctccggcctctaatggcgcggcagtcacggccgcggatggtgacgac
aaggacaaaaagaacttctccggcatccacagcactggcttcagggactttctgttgaag
cccgaattgttgcgcgcgatcagcgatctgggttttgaacacccctctgaagttcaacaa
gaatgtattcctcaagccgttcttggaatggatgtactgtgtcaggcaaaatccggtcac
ggtaaaaccgccgttttcgtactggcgactctccagcaactcgagcctgtgaatggcgag
gtctctgtcatcgtcctctgtcacactcgcgaactggccttccagatcaagaacgagtac
acccgcttcgccaaatacatgccagatgtccgcgtcgtcactttcttcggtggaactccc
gtctccaaggatgccgaacttctcagagacaagaccaagtgcccccacatcgtggtagcg
actcccggccgtcttaacgctctcgtgagggacaaggttatggacgccaaaaacgtgaag
cacttcgttctggacgaatgcgacaaaatgcttgaacagcttgatatgcgtcgtgatgtc
caagatatcttccggtcgacccctcaccacaagcaagtcatgatgttcagcgcgactttg
gccaaagaaatcagggcgacctgcaaaaagttcatggctaacccattggagattttcgtc
gatgatgagacgaagttgacgctgcacggtctgcagcaacacttcgtcaagttggaggag
gtcgggaagaacaggaaattgaacgagctccttgatactcttgagttcaaccaggtcgtc
atcttcgtgaaatctgttgcgagagcgatcgagttggacaagctgctcgtttcgtgtaat
ttccccagtatcagtattcactccggccttgcacaagaggagcgtataagccgctaccag
gcgttcaaggcgtttgagaagcgtatccttgttgccaccgatatttttgggcgtggtatc
gatgttgagcgtgtcaacatcgtcgtcaattacgactgccccccggatgcggacagctat
cttcatcgtgtgggtcgtgctggacgatttggaacgaagggtctcgccatcactttccag
tcatcggaggcggaccagcaggtgatggcgaccatccagtctcggttcgaagttgcgatc
cctgagcttcccgagcacatcgatcctgctagctacatgacttcttaa
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integrated database retrieval system
