Stereum hirsutum: STEHIDRAFT_168583
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Entry
STEHIDRAFT_168583 CDS
T03127
Name
(RefSeq) U4/U6 snRNP-specific spliceosomal protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
shs
Stereum hirsutum
Pathway
shs03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
STEHIDRAFT_168583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shs03041
]
STEHIDRAFT_168583
Spliceosome [BR:
shs03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
STEHIDRAFT_168583
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
WDR90_beta-prop_4th
PRP4
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
RMC1_N
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_RIG_1st
LEA_6
Motif
Other DBs
NCBI-GeneID:
18803365
NCBI-ProteinID:
XP_007304302
JGI:
Stehi1_168583
LinkDB
All DBs
Position
Unknown
AA seq
535 aa
AA seq
DB search
MAELTYDTLMDDPNYMGSERARMENKVILDELERKKKARAMAVPTDDNRVKARLREIGEP
ITLFGERAADRRDRLIYVLSQINAARGDDAMQVDEESSDSSEEEEEEFYSPGSLELLEAR
RRLAEFSLPRAQKRVAQQRIDSKLPLGRLIDIRKRVFADVKNFTNLGSQIGDERPLSIVR
FSPNNEMLATGSWSGSVKLWNMPSCTPIKTLRGHGDRVGGLAWHPQATLSQSPDAVNLVS
GAGDACVCLWSLNSETPISVMKGHQDRICRVAFHPSGDYVASASFDTTWRLWDVATSKEL
LLQEGHSKEVYTVEFQDDGALVASAGLDAIGRVWDLRTGRTAMVLDGHVQGILSMSFSPN
GYQIATGASDDTIRIWDMRSLKALYTIPAHLNNVSDVRFFRSDGAIPSWLSSAQPKSEPM
NGVVPTTTTSATTTSTPEPTKEGSATPAPTPSGTTTSSSADTLAQEWRYRPGLYMASAGY
DGVVKLWSADDWQLLATLQTDGSKVMSVDLSSDAKLLASGTYNRNYQLFTPASAL
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcagaactcacttatgacacgcttatggacgacccgaactacatgggctccgagagg
gcccggatggagaacaaggtcatcctcgatgaactcgaacgaaagaaaaaggcgagggct
atggcagtccccacagacgataatcgtgtcaaggctcgtcttcgtgaaatcggagaacct
atcactctatttggagagcgagctgcagacagacgcgaccgtctcatctacgttctttcc
caaatcaatgctgctcgaggcgacgatgccatgcaggtggatgaggaatcgtctgactcg
agcgaggaagaggaagaagaattctactcccccggatcgctggagttgcttgaagctcga
cgaagactcgcggagttctctctccctagagctcaaaagcgcgtcgcccagcagcggata
gacagcaaattacccctagggcgcctcatcgacatccgaaaacgcgtcttcgcggacgtg
aaaaatttcaccaatcttgggtctcaaataggggatgaacggccactgtcgatcgttcgc
ttttccccaaacaacgagatgttggcgaccggtagttggtccgggtccgtcaagctttgg
aatatgccttcgtgcacaccaataaaaaccctacgaggtcacggtgatcgcgtcggtggt
cttgcgtggcatccacaagccacactatcccaaagcccggacgcagtaaaccttgtgagt
ggcgcaggagacgcttgcgtttgtctttggtcacttaacagcgagacccccatttcagtg
atgaaaggtcaccaagatcggatatgtcgagttgcgttccatccgtcgggtgactacgtc
gccagtgctagctttgacacgacttggcggttatgggatgttgcgacgtcaaaagaactc
ttgttgcaggagggacactcaaaggaagtatatactgtggaattccaagatgacggtgcc
ttggttgcttctgcaggtcttgacgctatcgggcgagtatgggatcttcgaacaggacgc
acagctatggtcctcgacggacacgttcaaggcatcctctcaatgtctttctcaccaaac
ggataccaaatcgccaccggtgcttccgatgataccatccgaatatgggacatgcgatca
ctgaaagccctttacaccatcccagctcatctcaacaacgtgtccgacgtccgatttttc
cgctcagacggtgcgattccctcctggctctcctccgcacaacccaagtccgaacccatg
aacggcgttgttcccaccacaaccacctccgccaccaccacatcgactcccgaacccaca
aaggaaggctcagccaccccagctcccaccccttctggcaccaccacctcatcgtctgct
gatactctcgcacaagaatggcggtacagaccagggctgtatatggctagtgcggggtac
gatggtgtggtgaagctgtggagtgcggacgattggcagttgttagctacgttgcagacg
gatgggagtaaggtcatgtcggtggatctttcgagcgatgcgaagttgttggcgagcggg
acgtataaccggaattatcaattgttcacaccggcgagcgcgttgtag
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