Stereum hirsutum: STEHIDRAFT_65970
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Entry
STEHIDRAFT_65970 CDS
T03127
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
shs
Stereum hirsutum
Pathway
shs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STEHIDRAFT_65970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_65970
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
STEHIDRAFT_65970
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
STEHIDRAFT_65970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
Sda
Motif
Other DBs
NCBI-GeneID:
18806252
NCBI-ProteinID:
XP_007308770
JGI:
Stehi1_65970
LinkDB
All DBs
Position
Unknown
AA seq
286 aa
AA seq
DB search
MDVDLEDDSAPLSSKVTAPGEPITSSQAFMRGHGTYVDDDDVIASVAGTVERVNKLVTVR
ALRTRYNPEVGDLVVGRITEVQPRRWRVDTNSRQDAILMLSSVNLPGGVQRRKLESDELQ
MRNFFEEGDLLVAEVQAFFSDGAMSLHTRSLKYGKLRNGQLVTVPPILVRRLKSHFMPLP
CGVDLILGLNGYIWVSKHVKESEQEGEEGFDSEAVYSNRNDNIDDATRTAISRVANIIHV
LASHSVPLTDIVLLEAYEWAVEQDLEVKDLLQLEIGEALVTSLTGR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcgatttagaggatgactcggcgccactttcttcaaaagtcacggctcccggc
gagcccatcacttcctcccaagcttttatgaggggccatggtacatatgtcgatgatgac
gatgtcatcgcgtctgtcgctggaacagtcgaacgtgtaaacaagctggtcaccgttcgt
gctctccgaacaagatataaccccgaagtcggtgatcttgtcgtgggccgcatcaccgag
gtccaaccgcggaggtggagagtagacacaaattctcgtcaggacgcgatactgatgctt
tcctcagtcaatctaccgggcggtgttcaaagaagaaaacttgagagcgatgagctgcag
atgcggaatttcttcgaagagggcgacctcctagtcgccgaggtccaagctttcttttca
gacggagcaatgtccctccacactcgctcgttgaagtacggcaagctacgaaacggacag
ctcgtcacggttccgccgatcctcgttcggcggttgaagtctcatttcatgccattacca
tgcggagtcgatttgattctgggtcttaacggatatatatgggtcagtaagcatgtgaaa
gagagcgagcaagagggggaagaaggcttcgactccgaggcggtctattccaacaggaac
gataacatcgacgatgcgactcgaactgccatttcccgggtcgcaaacattatccacgtc
ctagcatcacattcggtacctttgacggacattgtgctgcttgaggcctacgagtgggct
gtcgaacaggatctcgaagtcaaggacctattacaactcgagataggagaggctctagtt
acttccttgaccggtcggtga
DBGET
integrated database retrieval system
