Stereum hirsutum: STEHIDRAFT_81840
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Entry
STEHIDRAFT_81840 CDS
T03127
Name
(RefSeq) ribosomal protein S5 domain 2-like protein
KO
K12589
exosome complex component RRP42
Organism
shs
Stereum hirsutum
Pathway
shs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STEHIDRAFT_81840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_81840
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
STEHIDRAFT_81840
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
STEHIDRAFT_81840
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
18807233
NCBI-ProteinID:
XP_007305827
JGI:
Stehi1_81840
LinkDB
All DBs
Position
Unknown
AA seq
327 aa
AA seq
DB search
MPLSKSEKTYIQTSLQSPSPSRADGRPLYDYRSIAIETGVAPLANGSVRVNIGKNSSSGG
GTEVLGAVKLEVENVSGKTDGRIVCSVSCSPSAYPHLSTGALDDLQYDYTTLLHQTLSHP
SLHPSTLGIIKGKKAWLLSLDLVVLSDSGNVYDALFMAARAALWDTKVPRTRSIEYRANA
KGGAQFGGGRADMDVDEDNKSGFDTRQVAAATDFELEDYWDEGEVLNGREKWPVCVTLNL
LPPIHYLDATSQEEAATPFRLLLIYSGANLQGMRLLGSGEVNLELMKSLINTGEKYASEL
SVALTVKLKDEDVRRNEKARSRFAAVR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatcaaaatcagagaagacgtatatccagacttctctgcaatcaccgagcccc
agtcgtgccgacggacgtcccctatacgactaccgttccatcgcaatcgaaacaggcgtc
gcgcccctcgcgaatggcagcgtgcgcgttaacatcgggaagaatagtagtagtggaggg
gggaccgaggttctgggcgccgtgaagcttgaggtggagaatgtcagtggaaaaacagac
gggcggatagtgtgctctgtgtcttgctcaccatccgcatatccccacctttcgactggt
gcattggatgatctgcaatacgactacaccacactcctgcatcaaaccctctcacatccg
tccctccatccctcaactctcgggatcatcaaaggaaagaaagcatggctcctttcactc
gatctcgtcgtcctctccgactctgggaatgtatatgatgcgttattcatggccgcccgt
gcggctctatgggacacgaaggtccctcggacacggagcatcgagtatcgcgcgaatgcc
aagggcggtgctcaattcggcgggggaagggcagatatggatgtggatgaagacaacaaa
agcgggtttgatacgagacaggtggcggctgcaacagatttcgaactagaagactattgg
gacgagggcgaggtgttgaacggtagggagaagtggccggtctgcgtcacgctgaatctg
cttccaccaatacactacctcgatgcaacatcgcaagaagaggcggccacccctttccga
cttttgctcatatactctggtgcaaacctgcaagggatgcggttattaggatcaggagaa
gtcaacctcgaattgatgaagagtttgatcaataccggggagaagtacgcatcagagctc
tcggtggctttgaccgtaaaactcaaagacgaggatgtacgtcgtaacgagaaagcacgg
tctcggtttgctgctgtacggtga
DBGET
integrated database retrieval system
