Stereum hirsutum: STEHIDRAFT_92044
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Entry
STEHIDRAFT_92044 CDS
T03127
Name
(RefSeq) WD40 repeat-like protein
KO
K15542
polyadenylation factor subunit 2
Organism
shs
Stereum hirsutum
Pathway
shs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shs00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
STEHIDRAFT_92044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shs03019
]
STEHIDRAFT_92044
Messenger RNA biogenesis [BR:
shs03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
STEHIDRAFT_92044
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
PROPPIN
NBCH_WD40
eIF2A
Beta-prop_DCAF12
Ge1_WD40
Tricorn_2nd
Beta-prop_DCAF4
Beta-prop_RIG_1st
WD40_RFWD3
WD_LRWD1
B-prop_COPA_B_2nd
PEP5_VPS11_N
Beta-prop_NUP159_NUP214
WDR54
Beta-prop_SPT8
Beta-prop_ELP1_1st
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
18807850
NCBI-ProteinID:
XP_007300792
JGI:
Stehi1_92044
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MPSLPLLLPPQAIPTQKSSSKVQEWEPSKYLQAPQPPPADDAKIQDLEMAAARQMMDGKA
MKKTRPRRTVDYGGPMGRWALLRKLQPNPRYVPYLRPSPPYIIDLLPPKAYPDNPSTSLC
TKFVHTSTNKVRCPVNVVVWTPEARRVLTGSTSGEFTLWNGLTFNFETILQAHDSAIRAM
KFTHSGTYLASADQSGIIKYFQPNMNNLTAWQGHREAIRGLSFSPDDDRFATASDDSTVC
IWSFEESRKERTLTGHGWDVKCVEWHPTKGLLVSGSKDNLIKFWDPRTGTALTTLHQHKN
TIQALAWSPNGNMVASASRDQTVRVFDIRAMKEFCILRGHKKEVCSVAWHPVHPLLVSGG
SEGSLLHWDLSIPSPAPLLSTSPSLPSAHTPHSNSPASHPTPSALLPSTITTPRATLSQA
HDSNVWSLAFHPLGHLLVSASNDHTTRFWSRERPGDSSSVFSGGGEKPPNVVDLSGQDAG
WDGDGMLDGFDGFDTEEAFVPGIGGGAGGESLPGIGGGGGGGGGGGGGWWGKEEEGSGVD
RVAGRMDGYGNGGGSGNMHSNGGPPPSGYAAGSRFGPGPIGGGPGAGFGYASAAGGGGDS
VRKRQSGPLPPQEAIFSGGGDGSFGHGGYDERDGREGREGREGREGWGGAGGSGAGAGGS
RRGGARGKSRWGGKKGRF
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgccatctctcccactgctcctaccacctcaagcaattcccacccaaaaatcatcgtca
aaagtgcaagaatgggaaccttcaaaatatctgcaagcgccccaacctcctccagcggac
gacgcgaagatacaagacctggaaatggcagccgcaagacagatgatggatggaaaggca
atgaagaagaccagaccacggcggacagtcgactatggagggcctatggggagatgggca
ttgttgcgcaaactccaaccaaatccacgatatgtgccatatttgagaccaagtcctccg
tacatcattgatctgctgcctccgaaagcatacccagataacccgtctacctcgctgtgc
accaagtttgtccatacatcaacaaacaaagtccggtgtccggtcaatgttgtagtgtgg
acccccgaagcccgacgcgtcctcaccggctccacctccggtgaattcaccctctggaac
ggcctcaccttcaacttcgagaccatccttcaagcgcacgactccgccatccgcgccatg
aagttcacacactccgggacctacctcgcctccgccgaccagtccggcatcatcaagtat
ttccagccgaatatgaacaatttgacggcgtggcaggggcatagggaggctatcaggggc
ttgagcttcagtccggatgatgatcggttcgcgacggcgagtgatgattcgacggtttgt
atctggagctttgaggagagtaggaaggagaggacgttgactggtcatggctgggatgtt
aaatgtgtagagtggcatccgactaaaggtttgctcgtatcgggcagtaaggacaacctc
atcaaattctgggatccacggacagggacagcattaaccacactccatcagcataagaac
acgatacaggctcttgcctggtcaccaaatggcaatatggtagccagcgcctcacgagac
cagaccgtgcgggtattcgacatccgtgcgatgaaggagttttgcatcctaagagggcac
aagaaggaagtttgctccgttgcatggcatcccgtccaccctctcctcgtctctggcggc
tccgaaggctccctcctccactgggacctctccatccccagccccgcccctctcctatca
acctccccctccctcccctccgcccacacaccccactccaactctcccgcctcccaccca
accccctccgccctcctccccagcacgatcaccaccccccgtgcgaccctctcccaagca
cacgactccaacgtctggtccctcgccttccacccgctcggccacctcctcgtctccgcc
tcgaacgaccacacgacccgtttctggtcgcgagagaggccgggagactcgagtagcgtg
tttagcggcggaggcgagaagccgccgaatgtggtggatctgagtgggcaggatgcgggt
tgggatggagatgggatgctggatgggttcgatgggttcgatacggaggaggcgttcgtg
ccggggattggaggtggtgcgggtggagaaagcttgcctgggattggaggaggcggaggt
ggaggcggaggtggaggaggaggctggtgggggaaggaggaggaagggagtggggtcgat
cgtgtggctggacggatggatgggtatggcaatggcggcggcagtggaaacatgcattcg
aatggcggcccgcctccttcgggctatgctgcaggctcaagattcggaccaggaccaatt
ggaggcggacctggtgctggattcggttatgcttctgcagcgggtggcggtggcgactca
gtgaggaagagacagagtggacctttacctccacaggaggcgatcttcagtggaggtgga
gatggtagctttggacatggagggtatgatgaaagggacggaagagaagggagagaaggg
agagaagggagggagggatggggaggtgctggtggtagtggtgctggtgctggtggttcg
aggagaggtggagcaaggggtaagtcgaggtggggtggaaagaagggaagattttga
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