Staphylococcus hsinchuensis: QQM35_00090
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Entry
QQM35_00090 CDS
T10123
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shsi Staphylococcus hsinchuensis
Pathway
shsi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shsi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QQM35_00090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shsi03019
]
QQM35_00090
03009 Ribosome biogenesis [BR:
shsi03009
]
QQM35_00090
Enzymes [BR:
shsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QQM35_00090
Messenger RNA biogenesis [BR:
shsi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QQM35_00090
Ribosome biogenesis [BR:
shsi03009
]
Prokaryotic type
rRNA helicases
QQM35_00090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
AAA_19
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
XAF70558
LinkDB
All DBs
Position
complement(15818..17320)
Genome browser
AA seq
500 aa
AA seq
DB search
MQNFKELGISDKLAETLESIGFTEATPIQKDSIPLALEGKDVLGQAQTGTGKTGAFGIPL
IEKVVGTTGVQALILAPTRELAMQVAESIKEFSKGQNVQVVTVFGGMPIDRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTNDIKTLILDEADEMMNMGFIDDMKFIMDKIPASQRQTML
FSATMPKAIQTLVQQFMKSPQIVKTMNNENSNPQIEEFYTIVKELEKFDTFTNFLDVHQP
DLAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAITFVNPIEMDYIRQIEHSNN
RQMQALRPPHRKEVLKARENDIKGKVKDWMLKDSEPRLQRIATELLEEYNETELIASLLQ
ELVESNDDVDVQLTFEKPLSRKNRQSKGPKRGNHKRGNKFDNKNRRGKGGYNNKKKNDRS
SDRKNNKKSMKGRTFADHQK
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatctcggacaagttggcagaaaccctagaatcaatc
gggtttacagaagccactccgatacaaaaagatagtatccctcttgccttagaaggcaaa
gatgttcttggtcaagcgcaaactgggacaggtaaaacaggtgcgtttggtataccatta
atcgaaaaagtcgttggaacaactggcgttcaagcattaattttagctccaacacgtgaa
ttggctatgcaagttgctgagtcaatcaaagaatttagtaaagggcaaaatgtacaagtt
gttacagtatttgggggcatgcctatagaccgtcaaatcaaagcccttaaaaaaggacct
caaatcgttgtgggtacacctggtcgtgtaatagaccatttaaaccgtcgcacacttaaa
acaaatgatattaaaacattaatattagatgaagcggatgaaatgatgaacatgggcttc
attgacgatatgaaattcattatggacaagattccagcttcacaaagacaaacaatgcta
ttttcagcgacgatgccaaaagccattcaaacattagttcaacaatttatgaaatcacct
caaattgttaaaacaatgaacaatgaaaattctaacccacaaatagaagaattctacact
attgtgaaagaacttgagaagttcgatacatttacaaatttcttagatgttcatcaacct
gatttagcaattgtgttcggacggacaaaacgtcgtgttgatgaattaacaagtgcatta
atttctaaaggatataaagctgaaggtttacacggggatattactcaagctaaacgttta
gaagtattgaaaaagttcaaaaacgatcaacttgatatattagttgcaacagacgtagct
gcaagaggacttgatatttcaggtgtcagccacgtatacaatttcgatatccctcaagat
actgaaagttatacgcacaggatcggtcgtactggccgtgctggtaaagaaggcattgcg
attactttcgttaatccgattgaaatggattatattagacaaattgaacattctaacaat
cgtcaaatgcaagctttaagaccaccacatcgtaaagaagtattaaaagcgcgcgaaaat
gacattaaaggtaaagtaaaagactggatgttaaaagatagcgaacctcgtttacaacgt
attgcgacagaattacttgaagaatataatgagacagaattaattgcatcattacttcaa
gaattagttgaatcaaatgatgatgttgatgttcaattaacatttgaaaagcctttatca
cgtaaaaatcgtcaaagtaaaggaccgaaacgtggtaatcataaacgtggcaataaattt
gataataaaaatcgtcgcggtaaaggcggttacaataataaaaagaaaaatgatcgttca
tcagacagaaaaaataataaaaagtcgatgaaaggtcgtacatttgctgatcatcagaaa
taa
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