Staphylococcus hsinchuensis: QQM35_04295
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Entry
QQM35_04295 CDS
T10123
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shsi Staphylococcus hsinchuensis
Pathway
shsi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shsi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QQM35_04295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shsi03021
]
QQM35_04295 (rpoC)
03400 DNA repair and recombination proteins [BR:
shsi03400
]
QQM35_04295 (rpoC)
Enzymes [BR:
shsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QQM35_04295 (rpoC)
Transcription machinery [BR:
shsi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QQM35_04295 (rpoC)
DNA repair and recombination proteins [BR:
shsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QQM35_04295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
XAF71559
UniProt:
A0ABZ3EFG8
LinkDB
All DBs
Position
873069..876665
Genome browser
AA seq
1198 aa
AA seq
DB search
MKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECSCGKYKRVR
YKGMVCDRCGVEVTKSKVRRERMGHIELAAPISHIWYFKGIPSRMGLLLDMSPRALEEVI
YFASYVVVNPGPTGLEKKTLLSEAEYREYYDKFPGQFTAKMGAEGIKDLLAEIDLDTELK
SLRDELESATGQRLTRAIKRLEVVESFRHSGNNPAWMILDVLPIIPPEIRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPNLKMYQCGLPKEMALELFKPF
IMKELVQREIATNIKNAKGKIERMDDEVWDVLEDVIQEHPVLLNRAPTLHRLGIQAFEPT
LVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYLTLERTDAVNTGTIYNDTNEVLKAYAKGYVHLHTRIGVHASSFNNPTF
TEEQNKKILTTSVGKVIFNEIIPDSFAYINEPSQANLEDKTPDKYFVSATELGEEGLKGY
FEDKELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGITVGVSDIVV
LPDKQDILDESEKLVERVQKQFNRGLITEFERYNAVVEIWTNAKEQIQGELMGSLGKTNP
IFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARK
GLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFNERIEG
RYAKETMRHPETDEIIVRPDELITPEIAKQITDAGFEQMYIRSAFTCNTRHGVCERCYGK
NLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNP
KGQAVITEIEGVVDDIKLGKDRQQEIVIKGANETRSYLASGTARLKVETGQSVDRGEVLT
EGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAGD
TKLLPGSLVDIHNFTDANREAFKGRKRPATAKPVLLGITKASLETESFLSAASFQETTRV
LTDAAIKGKRDNLLGLKENVIIGKLIPAGTGMRRYSDVNYEKALSQQEVVEETETTES
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataggactcgcttcacctgaaaaaatccgttcttggtcattcggtgaagttaaa
aagccagaaacaattaactatcgtactttaaaaccagaaaaagatggtctattctgtgaa
agaattttcggacctacaaaagactgggaatgtagttgtggtaagtataaacgcgtgcgc
tataaaggcatggtttgtgacagatgtggtgttgaagtaacgaagtcaaaagtacgtcgt
gaaagaatgggacatattgaattagctgccccaatatcacatatctggtatttcaaaggc
atcccaagtcgtatgggtctattattagatatgtcaccaagagcgttagaagaggttatt
tatttcgcttcttacgtggtggtaaatccaggtccaacaggcttagaaaagaaaacttta
ctttctgaagcagaatacagagaatattatgataaattcccaggtcagttcactgctaaa
atgggagctgaaggaattaaagatttactagcagagatcgatttagatactgaacttaaa
tcattacgtgatgagttagagtcagctactggccaaagacttacacgtgcaattaaacgt
ttagaagtcgtagaatcattcagacattctggtaataatccagcgtggatgattttagat
gtactacctattattccaccagaaatcagaccaatggttcaattagatggtggacgtttt
gctacaagtgatttaaatgatttatatcgtcgtgtcattaaccgtaacaatcgtttaaaa
cgtttattagacttaggtgctcctggcatcatcgttcaaaatgaaaaacgtatgttacaa
gaagcagttgatgcgcttatcgataatggtcgtcgtggccgtccagttactggaccaggt
aaccgtccattaaaatcgttatctcatatgttaaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaaacgtgttgactattcaggccgttctgttatcgcagtaggacctaac
ttgaagatgtatcaatgtggtttaccaaaagagatggcgttagaactattcaaaccattt
attatgaaagaattagttcaacgtgaaattgctacaaatatcaaaaatgctaaaggtaaa
atcgaacgtatggacgacgaagtatgggatgtgcttgaagatgtaattcaagaacaccca
gtactattaaaccgtgcgccaacacttcacagattaggtattcaagcatttgaacctacg
ttagttgaaggtcgtgcgattcgtctacatccacttgttacaacagcatacaacgccgac
tttgatggtgaccaaatggccgtccacgtaccactttctaaagaggcacaagcagaagca
cgtatgttaatgcttgctgcacaaaatatcttgaaccctaaagatggtaaaccagttgtt
acaccatcacaagatatggtattaggtaactattacttaactttagaacgtacagatgct
gttaacacaggtacgatttacaacgatacaaacgaagtattaaaagcatacgccaaaggt
tacgtgcacttacacacacgtatcggtgtacatgcaagctcattcaacaatccgacattt
actgaagagcaaaacaaaaaaatcttaacgacatcagtaggtaaagtgatattcaatgaa
atcattcctgattcatttgcttatatcaatgaaccttcacaagcgaacttagaagataaa
acaccagataaatactttgtttctgctactgaattaggtgaagaaggacttaaaggttac
tttgaagataaagaattaattgaaccattcaacaaaaaattcttaggtaacattatcgca
gaagtcttcaatagatttagcattacagatacttctatgatgttagatagaatgaaagac
ttaggattcaagttctcatctaaagctggtattacagttggtgtatcagatatcgttgtt
ttacctgataaacaagatatccttgatgaatcagaaaaattagtagaacgtgttcaaaaa
caattcaaccgtggtttaatcactgaattcgagcgttataacgcagttgttgaaatttgg
acaaacgctaaagaacaaatccaaggtgaacttatgggctcacttggtaagacaaaccca
atcttcatgatgagtgactctggtgccagaggtaacgcttcaaacttcactcaattagca
ggtatgcgtggtctgatggcagcaccatcaggtaagatcattgaattaccaatcacttca
tcattccgtgaaggtttaacagtattagaatacttcatctcaactcacggtgcgcgtaaa
ggtcttgccgatacagcacttaagacagccgattcaggttaccttacacgtcgtcttgtt
gacgttgctcaagacgttatcgttcgtgaagaagattgcggtactgaccgtggtttactt
gtatctgatatcaaagaaggtacagaaatgatcgaaccattcaacgaacgtatcgagggg
cgttacgcaaaagaaacaatgcgtcacccagaaactgatgaaatcatagtaagaccagat
gagttaatcacaccagaaattgcaaaacaaattactgatgcaggatttgaacaaatgtac
atccgctcagcattcacttgtaatacacgtcatggtgtatgtgaacgttgctatggtaag
aacttagcaacaggtgaaaaagttgaagttggtgaagctgttggtactatcgccgctcaa
tcaatcggtgaaccaggtactcagcttacaatgcgtacattccatactggtggggttgcc
ggaagcgatatcacacaaggtcttccacgtatccaagagattttcgaagcgcgtaaccct
aaaggtcaagcagtaattactgaaattgaaggtgttgtagacgacatcaaactaggtaaa
gaccgtcaacaagaaatcgtcattaaaggtgcaaatgaaacaagatcatatcttgcttca
ggtacagcacgcttgaaagttgaaactggtcaaagcgttgaccgtggtgaagttctaaca
gaaggttcaattgaacctaagaactatttatctgttgcaggtctaaatgctacagaaagt
tacctattaaaagaagttcaaaaagtttaccgtatgcaaggtgttgaaatcgacgataaa
cacgttgaagttatggttagacaaatgttacgtaaagttagaatcatcgaagctggtgac
actaaattactaccaggttcacttgtagacattcataactttactgatgccaaccgtgaa
gcattcaaaggtcgtaagcgtccagcgactgcgaaaccagtattacttggtattacgaaa
gcatcacttgaaactgaaagcttcttatctgctgcttccttccaagaaacaactcgagta
cttacagatgcagcaattaaaggtaaacgcgataacttacttggacttaaagaaaatgtt
atcatcggtaaattaattccagccggtacaggtatgagaagatatagcgatgttaactat
gaaaaagctttatcacaacaagaagttgttgaagaaacagaaactactgaatcttaa
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integrated database retrieval system
