Staphylococcus hsinchuensis: QQM35_10645
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Entry
QQM35_10645 CDS
T10123
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
shsi Staphylococcus hsinchuensis
Brite
KEGG Orthology (KO) [BR:
shsi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shsi03009
]
QQM35_10645 (rlmD)
Enzymes [BR:
shsi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QQM35_10645 (rlmD)
Ribosome biogenesis [BR:
shsi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QQM35_10645 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
Methyltransf_25
Cons_hypoth95
MTS
TRAM
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Methyltransf_4
N6_N4_Mtase
MethyltransfD12
TPMT
DOT1
Methyltransf_12
Methyltransf_32
PCMT
PDGF
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
XAF70481
LinkDB
All DBs
Position
complement(2122342..2123703)
Genome browser
AA seq
453 aa
AA seq
DB search
MSTLQKNDIHRGRVIDLTHEGHGVIKIDRYPIFIPQALIGEEIEYKVIKVKKNFAIGKLL
NVLKESEDRVEPPCVYYYKCGGCQLQHMTYEAQLAMKKEQVVNLFHRKGGFEDVIIHDTI
GMENPWRYRNKSQIPVGTNKDQQAIMGFYRQRSHQIIDMDECLIQAPIHQEIMNKVKQWF
NELNVSIYDEQKKQGLMRHVVIRTGHYSGEVMVIFVTNGKKFKESNIFVERLQEAFPQIV
SIKQNINTSHSNVIMGPQSVTLIGKDTLQDTLSEVEFKMSDQSFYQINTEQTEHLYQRAL
DYANLQGEEIVLDTYCGIGTIGLYMAQQAKHVYGVEVVQDAIDNAQDNATKNRFNNTTFV
CGKAEEVILKWKAQGIKPDVVMIDPPRKGCDETFLNTVLELNPKRIVYISCNPSTQQRDA
KILDQQYKLKQITPVDMFPQTTHVETVAQFDRK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtacactacaaaaaaatgatatacaccgaggtcgtgtcatcgaccttactcacgaa
ggacatggagtaataaaaattgaccgttatcctattttcatcccacaagctttaataggt
gaagagatagagtacaaagtgattaaagttaagaaaaattttgccataggtaaactatta
aatgtccttaaagaaagtgaggaccgagttgaaccaccttgtgtttattattataaatgc
ggtggatgtcagctgcagcatatgacatacgaagcacaattagctatgaaaaaagaacaa
gtggtaaatttatttcatagaaagggtggtttcgaagatgtcattattcacgatacaatt
ggcatggaaaatccttggcgatacagaaacaaatctcaaattccagtaggtacaaataaa
gaccaacaagccatcatgggtttttatcgtcaacgtagtcatcagattattgatatggat
gaatgtttaatacaagcgccaatacatcaagaaattatgaataaagtcaaacaatggttc
aatgaattaaatgtcagtatttatgatgaacaaaagaaacaggggcttatgagacatgtt
gtaattcgtacaggacattactctggcgaggtcatggtaatttttgttactaatggtaag
aaattcaaagaaagtaatatttttgtagagagattacaagaggcgtttccacaaattgtt
agcatcaaacagaatattaacacgtcccattcaaatgtgattatgggcccacaatcagta
acgttgattggaaaggatacgctacaagatacgttatctgaagtcgaatttaaaatgagt
gatcagtcattttatcaaattaatacagaacaaactgaacatctataccaacgtgcttta
gactatgcgaatttacaaggtgaagagattgtactagatacttattgtggaattggtacg
attggtctttatatggcacaacaagcgaaacacgtttacggtgttgaagtagtgcaagat
gcaatcgataacgcacaagataatgcgactaaaaatcgattcaacaatacgacttttgtc
tgtggtaaagcagaagaagttattttaaaatggaaagctcaaggaatcaagcctgatgta
gtgatgattgatccgccacgtaagggatgcgatgaaacattcttaaacacagttttagaa
ctcaaccctaaaagaatcgtttatatttcatgtaatccatccactcaacaaagagatgca
aaaattttagatcaacaatacaaacttaaacagattacacccgtcgacatgtttccacaa
acgacacatgttgaaaccgtagctcaatttgatagaaaataa
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