Sphingobacterium sp. ML3W: KO02_05730
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Entry
KO02_05730 CDS
T03258
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sht
Sphingobacterium sp. ML3W
Pathway
sht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KO02_05730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sht03019
]
KO02_05730
Enzymes [BR:
sht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KO02_05730
Messenger RNA biogenesis [BR:
sht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KO02_05730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
KH_PARP14_8
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AIM36251
LinkDB
All DBs
Position
complement(1285595..1286896)
Genome browser
AA seq
433 aa
AA seq
DB search
MQFQDLKLIAPILKALDAVGYTTPTPIQEQAIPIIFRKNDLLGCAQTGTGKTAAFAIPII
QMLSYSKVKTAKKNIRALVLTPTRELAIQIEENFNQYSKDLPIKNLVIFGGVGQQPQRDA
LKKGVDILIATPGRLLDLYGQGYIDFKHLEFFVLDEADRMLDMGFIHDVKKLIKIIPEKR
QTLFFSATMPPEIQKLSSHILVDPIKVEVTPESSTAEKIQQEVYYVKKNDKKDLLIHILK
EKNVGHALVFSKTKHGADRIVKDLEKKNIQAAAIHGNKSQSARQNALKNFKDRTLRVLVA
TDIAARGIDIDELAFVINYDLPNIPESYVHRIGRTGRAGKDGKAISFCDEEEYAFLLDIQ
KSIRMEIPLVEQHPYAMHISGVAPKKAGAKKSGKPASSSRNGQSSSSTSGNRRRPSAPRS
DSRNRSTSRRRDS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatttcaagatttaaaactcatagcaccaatccttaaggcgttggatgctgttgga
tatactactcccactccgattcaggaacaagcgattcccattatttttagaaaaaatgat
ttattaggttgcgctcagacaggaactggtaaaacagcagcttttgctattcctataatt
caaatgttaagctattcaaaagttaaaactgcgaaaaagaatattcgcgcattagtttta
actcctacacgtgaattagctattcaaattgaagaaaacttcaatcaatattcaaaagac
cttccaattaaaaatctagtgatttttggtggtgttggccaacaacctcagcgcgatgct
ttaaagaagggtgtcgatatacttattgcaacaccaggtcgtctcttagatttatatgga
cagggatatattgatttcaaacatttagaattttttgttctggatgaagctgaccgtatg
ttggatatgggatttatccatgatgtaaagaaactgattaaaataatacctgaaaaaagg
caaacattatttttctcagctactatgcctcctgagattcaaaagttatcaagtcatatc
ctagttgaccctattaaagtggaggtcacgccagaatcgagtacagctgaaaaaattcaa
caagaggtttattacgttaagaaaaatgataagaaggatttattgatccacattttaaaa
gaaaagaacgtaggccatgcattagttttctctaaaacaaaacatggtgcagaccgcatc
gttaaagatcttgaaaaaaagaatattcaagctgctgcaattcacggtaacaaatcacaa
agtgcacgtcaaaatgcgcttaaaaacttcaaagatcgtactttacgtgtgctagttgct
acagatattgctgctcgtggtattgatatcgacgaattggcatttgttatcaattacgat
ttaccaaatatccctgagtcatatgtacaccgaataggccgtacaggtagagcaggtaaa
gatggaaaggcaatctcattctgtgatgaagaagaatatgcattcctacttgatattcaa
aaatccatacgtatggagattcctttggtcgaacaacatccatatgctatgcatatatca
ggggtagcacctaagaaggcaggagcgaaaaaatcgggcaaaccggcatcatcctccaga
aatggtcaaagctcgtctagtaccagcggaaatagaagaagaccttctgctccaagatcg
gacagccgaaatagaagcacttcaagaagaagagattcttaa
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