Sphingobacterium sp. ML3W: KO02_12770
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Entry
KO02_12770 CDS
T03258
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sht
Sphingobacterium sp. ML3W
Pathway
sht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KO02_12770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sht03019
]
KO02_12770
Enzymes [BR:
sht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KO02_12770
Messenger RNA biogenesis [BR:
sht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KO02_12770
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF1758
AAA_19
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIM37464
LinkDB
All DBs
Position
complement(2872577..2873812)
Genome browser
AA seq
411 aa
AA seq
DB search
MKFTEFGLASSLEEGLDSMGYEDATPIQEQAIPVVLNNKDLIACAQTGTGKTASYLLPVL
HKIAEEQSDYINTLILVPTRELALQIDQQIMGLGYFTGATSIAVYGGGNGMDYEQQRTAI
KEGANIIVATPGRLIAHLASGKLHFNKVKHFILDEADRMLDMGFHEDIMKIISFLPEKRQ
NLLFSATMPPKIRTLAKNILHDPTEINIALSKPSEGISQQVYMVYDDQKIALIQDILKNP
MFTSTIIFASKKDIVKRLTSELHKNGIAAEAFHSDLEQAQREDVMSRFKARRINVLIGTD
VISRGIDIVGISLVINYDVPPDPEDYIHRVGRTARAATTGTAITFVNQKDQQRFAKIEQL
IGSSIERITLPSGFSEGPVYDPTRFTEHKKKSVKKKKFKKFVKKDVVVNKD
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaatttggtttagcatcttctttggaagagggcttagatagcatgggt
tatgaagatgcaacacctatacaggaacaggcgattcctgttgtcctaaataacaaagat
ttaatagcgtgtgcgcagacaggtaccggtaagacggcttcctatttattacctgtatta
cataagatagcagaagaacaatctgattatatcaacaccttaatattagttccaacccga
gagcttgccttgcagattgatcagcaaattatggggttaggttattttacgggagcgact
tctattgcggtatatggtgggggtaatggcatggactatgaacagcagcgaactgctatc
aaagagggagctaatatcattgttgctacaccggggcgattgattgctcaccttgcttca
ggaaaacttcactttaataaagtgaaacattttatattagatgaagcggatcgtatgttg
gatatgggttttcatgaggatattatgaaaatcatcagctttcttcctgaaaaaagacaa
aacttattgttttcggctactatgcccccaaagatcagaactttagcaaaaaatatttta
catgatcctactgagataaatattgctttatcaaaaccttctgaaggtatcagccaacag
gtatatatggtatacgatgatcaaaaaattgctttgatccaggatattttgaagaaccct
atgtttacaagtacaattatttttgcttctaaaaaagatattgtaaaacgattgacgagt
gaattgcataagaatggaattgcagcagaagctttccattcggatttggaacaggcgcag
cgtgaagatgtaatgagtcgtttcaaagcaaggcgaataaatgttttaataggtacggat
gttatctctagagggattgatatcgtgggaattagtttagtcattaattatgatgttcct
cctgatcctgaagattatattcaccgagttggacgtactgcacgtgcagctactactggc
accgctattacatttgtcaatcagaaagatcaacagcgtttcgccaagattgaacagttg
attggttcaagtattgaaaggattactttaccatcgggtttctctgaaggaccagtttat
gatccaacgcgttttacagagcataaaaagaagagtgtgaagaagaaaaaattcaagaaa
tttgtcaagaaagacgttgtcgtgaataaagattaa
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