Sphingobacterium sp. ML3W: KO02_14340
Help
Entry
KO02_14340 CDS
T03258
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sht
Sphingobacterium sp. ML3W
Pathway
sht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KO02_14340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sht03019
]
KO02_14340
03400 DNA repair and recombination proteins [BR:
sht03400
]
KO02_14340
Enzymes [BR:
sht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KO02_14340
Messenger RNA biogenesis [BR:
sht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KO02_14340
DNA repair and recombination proteins [BR:
sht03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KO02_14340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
RNase_H_2
HTH_PafC
Motif
Other DBs
NCBI-ProteinID:
AIM37725
UniProt:
A0A088F2P9
LinkDB
All DBs
Position
complement(3228287..3230476)
Genome browser
AA seq
729 aa
AA seq
DB search
MEIEKSLFDNLQDFFGFDTFKGDQEAIITNVLQRKDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGEDSIAHFLNSSLNKGDIMRVKQDVTAGKTKLLYVAP
ESLSKLENVEFLKQITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGDNIPIIALTA
TATPKVQSDIRKNLQMNDALLFKSSFNRGNLFYEVRPKKNVVKEIVRFIKGQAGKTGIIY
CLSRKKVEEISEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVDVIVATIAFGMGIDK
PDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGICLAFYSEKDVEKLTKFMKDKPVAEREI
GTQILKEVIDYSESAVCRRKQILHYFGENFDEAGCSSMCDNCRTEKTYFDAEQSILDILS
FIKEQGENFDDLHVINVMVGQNNQPVSAYKHDEHPLFGKGKEKGVVYWESLVRQTVLSNF
LAKDIDHYGLLKMTDIGRHYLENPYAIKFIMNRPLDFSDDSSSEDSGHSTGTLDTALLKM
LKDLRKKIAKSKSLPPFVIFQDPSLDEMCTHYPVSLDELKQIQGVGNGKAVKFGAQFVEL
IKDYVEENDIDRPVDLVIKGTANKSALKVAIIQNIDRKIGLDDIAAAKGISYEELLKEVE
TIVNAGTKLNIGYFVDEMIDQDRQDEVYDYFKQADSDSIDEALKDLDGDDYSYEDIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaaaatcacttttcgacaatttacaagatttttttggttttgatactttt
aaaggggatcaagaagcaatcataacaaatgtgctacagagaaaagacacatttgtcata
atgcctactggtggtggaaaatccatttgctatcagttaccggcattgatgagtgaaggg
acagcgattgtcatttcaccattaattgccttgatgaaaaaccaagttgatcagcttcgc
gcatttggcggagaggatagtattgctcactttttgaattcttcactgaataaaggtgac
atcatgcgtgttaaacaggatgttacggcagggaaaacaaaattactgtatgttgctcca
gaatcactttctaaattagagaatgtcgagtttctgaagcagattacggtttcttttgtt
gctgtcgatgaggcacattgtatctccgaatggggacatgatttccgtccagaataccgc
aagattcgtcaagttatcaatggtattggtgataatatccccattattgcattgacggct
actgctacccctaaggtgcagtctgatattcgtaagaatcttcaaatgaatgatgcactg
ctttttaaatcatcttttaatagagggaatttattctatgaagtaagaccgaagaaaaat
gtggtcaaagaaattgtacgttttattaaaggccaggctggtaagaccggtatcatttat
tgcttaagccgtaagaaggtggaggaaattagtgaggttttaaatatcaatggaatcaaa
gcactcccttatcatgccggattggatgcgaaaacgcgtgcagatacacaagataagttc
ttgatggaagatgtagacgttatcgtagcaacaattgcatttggtatgggtatcgataaa
ccggatgtacgttttgtcatccatcacgatattccaaaatcaatggaaggctattatcaa
gagacaggtcgtgctggccgtgatggtggagaaggtatctgtctggctttttattcggag
aaagatgtcgagaaattgacaaaattcatgaaggataaacctgttgccgaaagggaaata
gggactcagattctgaaggaagtaatcgattattctgaatcagcagtttgtcgtcgtaaa
caaattttacactattttggtgagaattttgatgaagcaggttgcagtagtatgtgtgat
aactgtcgtacggaaaagacttactttgacgctgaacagtccattttagatattctttcc
tttattaaggagcaaggtgaaaattttgatgatctacatgttatcaatgtgatggtcgga
caaaataaccaaccggtgtctgcttacaagcatgatgaacatccactttttggaaaaggt
aaagaaaaaggagttgtctattgggaatctttagttcgtcaaacggtgctcagtaatttc
cttgcgaaggatatcgatcattatggattattgaagatgactgacatcggtcgtcattat
ttggaaaatccttatgcaattaaatttatcatgaatcgtcctttggatttttctgatgat
tcttcatctgaagattcaggacattcaaccggaacacttgataccgctttattgaagatg
ttaaaggatcttcgtaaaaaaattgcgaaatctaaatctttacctccttttgttattttt
caagacccatccttggatgagatgtgtacacattatccagtgtcactggatgagttaaaa
cagatacaaggagtagggaatggtaaagcagtcaaattcggagcgcagttcgttgagttg
atcaaggactatgtagaggaaaatgatatcgatcgtccagttgatcttgtgattaaagga
actgcaaataaatctgcgctgaaagttgccatcatccaaaatattgatcgaaaaataggt
ttagatgatatcgctgcagcaaaaggaatcagctatgaagaattgctgaaggaagtggag
accatcgttaatgctggaactaagcttaatatcggatattttgttgatgagatgatcgat
caagatcgtcaggacgaagtgtatgattattttaaacaggctgattcagattcaattgat
gaagcattgaaagatttagatggagatgattattcgtatgaagatattcaattgatgcga
ataaagtttatgtctgaattagggaattag
DBGET
integrated database retrieval system
