Sphingobacterium sp. ML3W: KO02_17155
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Entry
KO02_17155 CDS
T03258
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sht
Sphingobacterium sp. ML3W
Pathway
sht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KO02_17155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sht03019
]
KO02_17155
03016 Transfer RNA biogenesis [BR:
sht03016
]
KO02_17155
Enzymes [BR:
sht01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KO02_17155
Messenger RNA biogenesis [BR:
sht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KO02_17155
Transfer RNA biogenesis [BR:
sht03016
]
Prokaryotic type
tRNA degradation factors
KO02_17155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
OB_HELZ2
RNase_II_C_S1
WHD_E2F_TDP
Motif
Other DBs
NCBI-ProteinID:
AIM38217
LinkDB
All DBs
Position
3857787..3859916
Genome browser
AA seq
709 aa
AA seq
DB search
MTTKKENPYQEVLTQLIIDIFEKSSNKALNYKQVASKLNVHDSDSKIAIANILTSQPKNS
PFIEVEKGKFKLRQLKVYVTGKVDMTAEGSAYIIPEDEFENDIFVAPRKLRQALHGDIVK
VHTFEKSRGRKKEGEVVEIIQRAKTDFTGIINLSQNFAFFIADDKKMLHDIFIPLDNLVG
AKDGEKAVVSIIDWPEGAKNPIGKVKTILGKKGENNTEMNAILADYGFPLKFPKKVEEEA
NALPETCSKEEIAKRRDFRNITTFTIDPADAKDFDDAISFQQLENGNYEIGIHIADVSHF
VIPETELDKEAYERGTSVYLVDRVIPMLPERLSNGVCSLRPHEDKLCFSAVFELDEDANV
LEQWFGRTIIHSDRRFSYEEAQEIIETKTGDFSSEILKLNELAYILRERKFKNGAIAFES
EEVKFILDENGKPTGVYTKVRKDAHKLIEDFMLLANRKVAEYIGKQGKGKNKLPFVYRFH
DVPNPETLATFSQFAARFGHKLTIKSDKETAKSLNALMTKIEGSKEQNMLTSLAIRSMAK
AIYTTKGTSHYGLAFDYYTHFTSPIRRYPDVMVHRLLAYYLDGGNKINADHYEKMCEHTS
QMEKKAAEAERASIKYKQAEFLQEQIGTEYTGIISGVTEWGMYVEIQSNKCEGMIRLRDI
NDDFYVLDEKNFAIIGQRKKKKYQLGDEVQIKVKKVDLDKRQIDFTLIS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaaaaaaagaaaacccatatcaagaggttttgacacagctcatcatcgacatc
tttgagaagtcaagcaacaaagccctcaactacaaacaagtcgcatcaaaattgaacgtt
cacgattccgattctaaaatagctatcgccaatatcttaacttctcaacccaaaaacagc
ccatttatagaggttgaaaaagggaagtttaaacttcgtcagctcaaagtttacgtaaca
ggtaaagtcgatatgaccgctgaaggatctgcttatattatacccgaagacgaatttgaa
aatgacattttcgtagcacctagaaaactacgtcaagcattacatggagacatcgttaag
gtacatacatttgagaagagcagaggccgaaaaaaagaaggcgaagttgtcgaaattatt
caacgagccaaaacagattttaccggcatcatcaacctttcacaaaacttcgccttcttc
attgctgatgacaaaaaaatgcttcatgacatctttattccacttgataatcttgttggc
gcgaaggatggcgaaaaggctgtagtctccatcattgactggcctgaaggagctaaaaat
ccaatcggaaaagtcaaaactattctaggtaaaaagggagaaaacaacaccgagatgaat
gccatcttggcagactacggtttcccactaaaatttcctaaaaaagtagaggaagaagca
aacgcactaccagaaacctgctcaaaagaagagattgcaaaaagaagagattttcgaaac
atcaccactttcaccattgatcccgcagatgccaaagattttgatgatgccatctcgttt
caacaactagagaatggaaattacgaaattggaattcacatcgcagacgtctcccacttt
gtcattcctgaaacagaattagacaaagaagcatacgaaagaggtacttctgtgtacttg
gtcgacagggtgattcctatgcttccagagcgattgtccaatggcgtgtgctcacttcgt
ccccacgaggataaactttgcttctcggctgtctttgagctcgatgaggatgcaaatgta
ctagaacagtggtttggcagaacaatcatccattcagaccgtcgtttttcttatgaagaa
gcgcaagagatcatcgaaacaaaaacaggtgatttttcttcagagatcctaaaactgaat
gaacttgcttatatcctccgcgaacgcaaattcaagaatggcgcaattgcctttgaaagt
gaagaggttaagtttatattggacgagaatggaaagcctacaggtgtctacactaaggtt
aggaaagatgcgcataagcttattgaagacttcatgttacttgccaatagaaaagttgcc
gaatatatcggaaaacaaggaaaaggtaaaaataaattacctttcgtctaccgttttcat
gatgttcccaatccggaaacattagcaacgttttcacaattcgcagctcgatttggacat
aaattaacgataaaatcggataaagaaacggccaaatccttaaatgcattaatgaccaag
attgaaggtagcaaagaacagaatatgttaacttcccttgctattcgctccatggcaaaa
gccatatacacgactaaaggaacaagccattacggattagcatttgattattatactcat
tttacatcccctatccgacgttatcccgacgttatggtacataggctcctagcttactac
cttgatggcggaaataaaatcaatgccgatcattacgagaagatgtgcgaacatacttca
cagatggaaaagaaagcagcggaagcagaacgcgcttcgatcaaatacaaacaagcagaa
ttccttcaagagcaaattggaactgaatacacaggtattatctctggcgtgacagaatgg
ggtatgtatgtggaaattcaatcaaataaatgtgagggaatgatcaggcttcgcgatatt
aacgacgatttttatgtcttggatgaaaaaaactttgccatcattgggcaacgtaagaaa
aagaaatatcaattgggtgatgaagtacagattaaagtcaaaaaagttgaccttgacaaa
cgccagattgacttcaccttaataagctaa
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