Staphylococcus hyicus: SHYC_03885
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Entry
SHYC_03885 CDS
T03578
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shu
Staphylococcus hyicus
Pathway
shu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHYC_03885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shu03019
]
SHYC_03885
03009 Ribosome biogenesis [BR:
shu03009
]
SHYC_03885
Enzymes [BR:
shu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SHYC_03885
Messenger RNA biogenesis [BR:
shu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHYC_03885
Ribosome biogenesis [BR:
shu03009
]
Prokaryotic type
rRNA helicases
SHYC_03885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
CMS1
AAA_30
AAA_19
SUa-2TM
Cas3-like_C_2
TetR_C_5
Motif
Other DBs
NCBI-ProteinID:
AJC95572
LinkDB
All DBs
Position
834249..835736
Genome browser
AA seq
495 aa
AA seq
DB search
MQNFTSLGVSERTAETLESMGFTEPTPIQKDSIPSALKNLDILGQAQTGTGKTGAFGIPL
IEKVVGQEGVRALILAPTRELAMQVAEQLREFSRGQKVQVVTVFGGMPIDRQIKSLKRGP
QIVVGTPGRVIDHLNRRTLKTQDIETLILDEADEMMNMGFIDDMRYIMDKLPSDNRQTML
FSATMPRAIQELVQKFMKSPQIIKTMNNELSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKQGMAVTFVNPIEMDYIRQIEQANR
RQMSALRPPHRKEVLRAREEEIKSKVENWMAATKEPRVESIAHQLLEVYDHSDLVTALLQ
ELVESNDEVEVQLTFEKPLARKNRQPKGNRKGGGGKRHAKSRRSNKSGFNKKGNAHKDKR
ESKVKKGRTFADHQK
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttacaagcttaggtgtttcagagagaacagctgaaacattagagtcgatg
ggatttacggaacctacaccgatacaaaaggatagcattccatccgctcttaaaaattta
gatattttgggccaagcacaaactggtacaggaaaaacaggtgcttttggtatcccatta
atagaaaaagtagtgggccaagaaggcgtgcgcgcacttattttggcaccaacacgtgaa
cttgcaatgcaagtagcagaacaattacgtgaattcagtcgcggacaaaaagtacaagtt
gtgacggtatttggcggcatgccaatcgatcgtcaaattaaatctttaaaacgagggcca
caaattgttgtaggtacacctggtcgtgtcatcgatcacttgaatcgtcgtacgcttaaa
acacaagatattgagacattaattttagatgaagcagatgaaatgatgaacatgggcttt
atcgatgatatgcgttacattatggataaattaccatctgataaccgtcaaacaatgctt
ttctcggcaacaatgcctagagcaattcaagaacttgttcaaaaatttatgaaatcgcca
caaatcatcaagacaatgaacaacgaattgtcggaccctcaaattgatgaatactacaca
atcgtgaaggaacttgaaaaatttgatacattcacgaatttcttagatgtacaccaacca
gaacttgccatcgtatttggtcgtacgaaacgtcgtgtggatgaattaacaagtgcactt
ttatctaaaggatataaagcagaaggactacacggagatattacacaagcgaaacgttta
gaagttttgaaaaaattcaaaaatgatcaaatcgatattttagtggctacagatgttgct
gcacgtggtttagacatttcaggtgtcagccatgtttataacttcgacattccacaagat
actgaaagttatacacatcgtatcggtcgtacaggccgcgcaggaaaacaaggtatggct
gttacatttgtaaaccctattgaaatggactacattcgccaaattgaacaagccaatcgt
cgacaaatgagtgcattacgtccaccgcatcgtaaagaagtgttacgtgcacgtgaagaa
gaaattaagtctaaagtggaaaattggatggcagcgacgaaagaaccgcgcgttgaaagc
attgcccaccaattacttgaagtttacgatcattctgatttggtaactgcacttttacaa
gaacttgtagagtcaaatgatgaagttgaagtacaactaacatttgaaaaaccacttgct
cgtaaaaaccgtcaacctaaaggtaatcgtaaaggcggcggcggcaaacgtcatgcgaaa
tcaagacgtagtaacaaatcaggtttcaacaaaaaaggaaatgcacataaagataaacga
gaatctaaagtgaaaaaagggcgtacattcgctgatcaccaaaaataa
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