Staphylococcus hyicus: SHYC_05110
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Entry
SHYC_05110 CDS
T03578
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shu
Staphylococcus hyicus
Pathway
shu03410
Base excision repair
shu03430
Mismatch repair
shu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHYC_05110
03430 Mismatch repair
SHYC_05110
03440 Homologous recombination
SHYC_05110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shu03400
]
SHYC_05110
DNA repair and recombination proteins [BR:
shu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SHYC_05110
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SHYC_05110
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHYC_05110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
AAA_26
CLP1_P
Tctex-1
Motif
Other DBs
NCBI-ProteinID:
AJC95780
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Position
1069954..1071708
Genome browser
AA seq
584 aa
AA seq
DB search
MKVKNINNSEYSDVIKQVLSNRGIEKSDFKYYLEPSKDLMPNYKLLDNIYIGIDLLNRHV
KNRSNIGIIVDSDFDGLTSTAIFYKFLINYCNVEQDLINLILPRRKSHGINMEDVTCVLS
EGDLLIVPDAGSSDFEQHEELNSKSISCLVVDHHLAPQKDTPAIIINNQLSDSFPNKALT
GSAMSYLFCKGYLNENNCDDPTDLQDLAAMGLIADRADFSQDLGAYFMMRSGLKSENINS
KLLKKVVEKNGNLEENTDLNAKDIGFNVAPIFNSVFRMGKVEELEQVIHGICEFDYELYN
KRKKMNQSIVEEAYLRAMSVKRRQKKQEDEIMEKIKAHIKDKGSDKYKILIVNSTGIVKD
SGMNGLVAMKLVREYNRPVLMVTQVGDKFKGSARNLNNSPIEDLNRFLSDTGYFTCRGHA
NAFGVEFDSEYALNIQQELEAKLIDVDLDNVQYEVDFEWSNHIDIPTIHQLAEYKNMWCN
GIDEPLIYLKDIYIKKEDFNFIGKTGNTLKLNIQGVDLIKFRISEDEKREIAMADSTSYI
NLIATASVNTYKGINTPQLMIEDFNLIPAKDRLDTHISLNELPF
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagttaagaacattaataactcagaatatagtgatgtgattaaacaagtactatct
aacagagggattgagaaaagtgattttaagtattatttagaaccaagtaaagatttaatg
cctaattataagttgttggataacatatatatagggatagatttactaaataggcacgtt
aaaaatagatctaatataggtatcatagtcgacagtgactttgatgggttgactagtact
gctatcttttataagttcttaattaattattgtaatgttgaacaggatttaattaattta
atcttacctagaagaaaaagtcatggtatcaatatggaagatgttacatgtgttttaagt
gaaggagatttattaatagtaccagatgcaggatctagcgattttgagcaacacgaagaa
ttaaatagtaaatcaatcagttgcttagtggtcgaccatcacctagctccccaaaaagat
acacctgctataattataaataatcaactttctgactccttccctaataaagcattaact
ggttctgctatgtcttatctattttgtaaaggctatctaaatgaaaacaattgtgatgac
ccaacagatttacaagatttggccgctatgggattgattgcagatagggcagatttctca
caagatttaggtgcatattttatgatgcgctcaggcctaaaaagtgagaatattaatagt
aagctgctaaaaaaagttgtagaaaaaaatggcaaccttgaagaaaatactgatttaaat
gccaaagacattgggtttaatgttgctcctatttttaattctgtttttcgaatgggaaag
gttgaagaactagaacaagtaattcatggaatctgtgagtttgactatgaattgtataac
aaacgtaagaaaatgaaccaaagcatagtcgaagaggcttatttaagagcaatgtcagtt
aaaagaaggcagaagaagcaagaagatgaaattatggagaaaattaaagctcacatcaaa
gataaaggttccgataaatataaaatacttatagtaaattctactgggattgttaaagat
agtggaatgaacggactagtagcaatgaagttagttcgcgaatataataggcctgtttta
atggtcactcaagtaggggataagtttaaaggatcggcaagaaacttgaataattccccg
attgaagacctgaatcgttttttgagtgatactggatatttcacatgccgtggccatgca
aatgcttttggtgtggagtttgattcggaatacgcattaaacattcaacaagaactagaa
gctaaactaatagatgttgatttagacaatgttcaatatgaagttgattttgagtggtca
aaccatattgacataccaaccattcatcaactagcagaatataaaaatatgtggtgcaat
ggtatcgatgaaccgctaatctatttaaaggatatttatataaagaaagaagattttaat
tttataggtaaaactggtaatactttaaaattgaatatacaaggcgtagatttaattaaa
tttagaattagcgaagatgaaaaacgtgaaattgccatggctgattcaacgtcatatatt
aatctaatagctactgcatctgtaaatacatacaagggtattaacacaccacaattaatg
atagaagattttaatttaataccagcaaaagacagattggatacacatatttctttaaat
gaattgccgttttaa
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