Staphylococcus hyicus: SHYC_05280
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Entry
SHYC_05280 CDS
T03578
Name
(GenBank) DNA polymerase III alpha subunit family protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shu
Staphylococcus hyicus
Pathway
shu03030
DNA replication
shu03430
Mismatch repair
shu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHYC_05280
03430 Mismatch repair
SHYC_05280
03440 Homologous recombination
SHYC_05280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shu03032
]
SHYC_05280
03400 DNA repair and recombination proteins [BR:
shu03400
]
SHYC_05280
Enzymes [BR:
shu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHYC_05280
DNA replication proteins [BR:
shu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHYC_05280
DNA repair and recombination proteins [BR:
shu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHYC_05280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
PsbU
Motif
Other DBs
NCBI-ProteinID:
AJC95812
LinkDB
All DBs
Position
1091992..1095939
Genome browser
AA seq
1315 aa
AA seq
DB search
MNDKLKLCALHNHSDFSNFRLIDAITRTEELLLTADMLGYSALAITEHESIASSVQILKD
LNNLKNKGKLKTLDKLIFGNEIYLVDSLEEVRDNYQSGVTKFPHFILMAKNRKGFEALSK
LSSQAWKNSFFTGLMERTPTTKEFLRQVVHSNEYKDTLIATSACVGSNVNIPLIRAMEAE
NEGNLSGRDNLIDKSRKEITWCIETFGKDNFFLELQPALSEVQKYCNKWLVKFSKEFGLK
CVLANDTHYARPGDREIHKIFLNSKESSGFREVDEFYYYCYMHSKQEMEKQMDYLGGEVV
QEALLNTCAIYDLVEEYDLQLDPVIPKSTIPEFQIRHIFRPAYDKYTYIKYLAESEYEDD
RYLLYLIEEGYFNELHYDGISSKEFHKILDRINQELKEIIGVGKKINQTMTSYYLTCREI
VNIMWQDDECGGQSLVGSGRGSGAGFLINYLLGITQINPLDYYNMPHTRHLSSERVQVGA
DAASSIPDIDVDCEGSKRQQIIHALKNHYGEDRVLNVCTYGTEGAKSAIKMACRGLGIPD
TEGQYLGSFIKTERGSQWSINDTLYGNEEKGRKPDTQFRREMEKHPKLIEVATRLEGLTT
RRGIHAGGVIIFNDEAFKNNAIMTASKGSAHVTQFNLSDSEYTGGVKFDLLSVENLSRIR
ETLDLLAKDGLIDDSKSLRENFRDLLHPKNLDLENKEYFDMASKGDISDLFQFSTEIGRN
SVIKVSPNSFEEFCAANSLMRLQSEDGEQPIDKYIRHKENIQLWYDEMKNWGLNSDEIKV
MEKHLLHDFGLNITQEVSMALSADPKISNFDILEQNKLRKVIAKPKGAALDEIKSLFYRR
GFEQGTRKELLDYVWEVQFKMQMSYSFSQLHVTAYSIIGIQNLELNRSFPRIYWQTACLN
VDSDSISEDSKDIDYAKIANGIGKIKSYGVEVKLPDINKSDLAFTPDVENNAIIYGLKPV
KSLNSKIVADIIANRPYNSVEDVLTKLYDTNLITNTHLIAMVKSGMLDNISKSRKSAMMD
VIRHITKLPDKLTMQNIKLLIEADILKDRKERDLIMLRESFNKNVLRKVQTGNSKSKHKI
FRVDNMELYNKLCGDVGIVEVHNNYYEVDEKEFKKFFDKQIGDLKEWLKTEEPLKIAHSY
LLNDQWIKYALGSYSKWEMETLSFYYHDHELADVNKETYNISSYCKLPENPIVVDKFKFK
GREMPKYQILNIAGVVIAKDPNKHIVTILTSDGSVVPVKYQGNFSAYDKTIKRDGKVIEK
SWFSKGNLLIISGFRRGNQFVAKKYADSNTSTTTKLIDYVGDNGEITYKLDRELL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataaattgaaattatgtgcattacataatcactcagatttctccaattttaga
ttgattgatgctattacacgaacagaggaattattattaactgctgacatgttaggctat
agtgcacttgctattactgaacacgaatctattgcaagctcggtacaaattcttaaggat
ttaaataaccttaagaacaagggaaagctaaaaaccttagacaaattaatcttcggaaat
gaaatttatctggtagatagtttagaggaagtaagggataactatcaaagtggagttact
aaatttcctcattttatacttatggccaaaaatagaaaaggttttgaagctttaagtaag
ttatcatcacaggcttggaaaaattcattctttacaggtttgatggaacgcacaccaact
actaaagaatttttaagacaagtagtacatagtaatgaatataaagatacattgatagca
acatctgcttgtgtaggatctaacgttaatattcctttaattagagctatggaagcggaa
aatgaaggcaatttatctggtagggataatctgattgataagtctcggaaggaaattact
tggtgtattgagacttttgggaaagacaactttttcttagaactacaaccagccttgtct
gaagtgcaaaaatattgtaataaatggcttgttaaattctctaaggagtttgggttaaaa
tgtgttttagcaaatgacacccattatgcacgaccaggagatagagaaatacataagatt
ttcttgaattctaaagaatctagtgggtttcgtgaagttgatgaattctattattattgt
tatatgcactctaaacaagagatggaaaaacaaatggattatttagggggagaagtagta
caagaagcattattgaatacatgtgctatttatgacttagtagaagaatatgacttacaa
ttggatcccgtaattccaaaatctactatccctgaatttcaaatcaggcatatatttagg
ccagcttatgataaatatacatacattaagtatttagcagagtcggaatatgaagatgac
agatatttactgtatttaatagaggaaggttactttaatgagttgcattatgatggaatc
tcaagtaaggaattccataagatacttgatagaattaaccaagaattgaaagagattatc
ggtgttggtaaaaagattaaccaaacaatgacttcatattatctaacgtgtcgtgaaatt
gttaacatcatgtggcaagatgacgaatgtggagggcaaagtttagttggttctggacga
ggttctggagctggatttctgattaattacttgttaggtattactcaaattaatccctta
gattattacaatatgccacacactcgtcatttatcaagcgaacgagtgcaagtaggcgct
gatgcagcatcaagtatacctgatatcgatgtcgattgtgaaggtagtaaacgtcagcag
attatacatgctttaaagaaccactacggtgaggatagagttcttaatgtctgtacatat
ggaactgaaggtgctaaatcagctataaaaatggcttgtcgtggattaggtattcctgat
acagaaggacaatacttaggctcatttattaaaactgagcgaggtagtcaatggagtatt
aatgataccttgtatggtaatgaagaaaaggggagaaaacctgacactcaatttagaaga
gagatggaaaagcatcctaaattaattgaagttgcaacaagacttgaaggattaaccact
agacgaggcattcatgctggcggtgtaatcatatttaatgatgaagcttttaaaaataat
gcaattatgacagctagtaaaggttctgcacatgttacacagtttaatttatcagactct
gagtatacaggaggagttaaatttgatttgttaagtgtcgagaacttatcgaggattaga
gaaaccttagatttacttgcaaaagatgggttaatagatgatagcaagtcgttgcgtgag
aacttcagagatttattacatcctaaaaatctagatttagagaataaagaatactttgat
atggcatctaaaggcgacatatctgatttattccaattttcaacagagattggtcgcaat
agtgtaattaaagttagtccaaattcatttgaagaattttgtgctgccaactcactcatg
cggttacaatctgaagatggtgaacagccaatcgataaatatataagacataaagaaaat
attcaattatggtatgacgaaatgaaaaattggggcttaaacagtgacgaaattaaagtt
atggagaagcatttactacatgattttggtttaaacatcacacaagaggtgtcgatggca
ctctcagctgatccaaaaatctctaatttcgacattttagagcaaaataagctcagaaaa
gtcattgcaaaaccaaaaggagcggctttagacgaaataaaatcactcttttatcgtaga
ggttttgagcaaggaacacgcaaagaattgcttgattacgtttgggaagttcaatttaaa
atgcagatgagctatagtttttcacaactgcatgttacagcttattctattatcggtatt
caaaatttagaacttaatcgaagctttccacgtatttattggcaaacagcatgcttaaat
gttgatagtgattcaatttcagaagatagtaaagatattgactacgcaaagattgcaaac
ggtattggaaagattaaatcatatggggtagaggtaaaactacctgacattaataaatca
gatttagcatttacaccagatgttgaaaataatgcaattatctatgggctcaaaccagta
aaatcattaaattctaagatagtcgcagatatcattgctaatagaccttataattcagtt
gaagatgttttaaccaaactttatgatactaatctaataactaacacgcatctgattgct
atggttaagtctggtatgttggataatattagtaaatcacgtaaaagtgctatgatggac
gtaatccgacatataactaaactaccagataaacttactatgcaaaatataaaattgtta
atcgaagctgatattttaaaggatcgaaaagaaagagatttaattatgctacgtgaatct
tttaataaaaatgtacttagaaaagttcaaacaggtaatagtaagtcgaagcataaaata
tttcgagttgataatatggaattatataataagttatgtggagatgtaggaattgtcgaa
gtacataataattattatgaggtagatgaaaaagagtttaaaaaattctttgataaacaa
ataggtgacctaaaagaatggcttaaaacagaagagcctctcaaaattgcccatagttat
ctgttaaatgatcaatggattaaatatgctttaggctcatattctaaatgggaaatggaa
acattgtcattttactaccatgatcatgagttggcagatgttaacaaagagacgtataac
attagtagctattgtaaactacctgagaatccaatagtggttgataagtttaaatttaaa
ggtagagagatgcctaaatatcaaatactaaatattgcaggcgtagtaattgctaaagat
cccaacaaacatattgttacaattttaactagtgatggttctgtagtacctgttaaatac
caaggtaacttttctgcttatgataaaactatcaaaagagatggtaaagtaattgaaaaa
agttggttttctaaaggtaacttattaattatttcagggtttagaagaggaaatcagttt
gtagctaaaaagtatgctgattccaatacgtctactactactaaactaatagattatgtg
ggggataatggagaaattacttataaattagatagagaattgttataa
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