Staphylococcus hyicus: SHYC_06390
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Entry
SHYC_06390 CDS
T03578
Symbol
recJ
Name
(GenBank) single-stranded-DNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
shu
Staphylococcus hyicus
Pathway
shu03410
Base excision repair
shu03430
Mismatch repair
shu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SHYC_06390 (recJ)
03430 Mismatch repair
SHYC_06390 (recJ)
03440 Homologous recombination
SHYC_06390 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shu03400
]
SHYC_06390 (recJ)
DNA repair and recombination proteins [BR:
shu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SHYC_06390 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SHYC_06390 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHYC_06390 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AJC96019
LinkDB
All DBs
Position
1301772..1304054
Genome browser
AA seq
760 aa
AA seq
DB search
MIQSKYKWVSKTNDNVISEETLKSFNITPLMKCILEHKGITTYEDVHTLLHTDTIVHDTA
LLSDIERATERIQSAIKSKEPILVYGDYDADGVTSTSILVHTLEQLGAIVGWYIPNRFSE
GYGPSDVAFKNAYDEGVKLIITVDNGIQGHEEIDMVQKLGVDVIVTDHHEIGETLPNAYA
IVHPMHPDYDYPFPYLCGAGVALKLAQHLLNELPDYFWVYAMIGTIADLVPMHDENRSIV
RKGLKLMNKETPTALKAILNEAKYDDVINEETIGFTIGPRLNAVGRLDDASLAAELLMTD
DIDEAQFLAEQVEHFNQERKDIVKTITEEAMTIAKSQVEEGQRFLVLYQENWHEGILGIV
ASRIVEAYQRPTMILNIDYEKQYAKGSARSIAQISMFELLSSQSHLIDKFGGHHAAAGLT
LPIDNVELLKQALNAEMSMKYSEDALQPEKMIDATIALDEVTVENIASLERLRPFGMQFE
RPVFRLNNLTIQQAKAIGQQQNHLKMSFVEQKLQGLFWNEGSRIHELMPNQHINAIGELQ
INEWNGNRTPQLIVADINSNGRQIFDYRSKNKKLPQFEVASNTCYLIHPNSDKLSEHEYY
YGEPIPNAYDKCVFRELPLTLDDFKETLHVIQSSQLYVQFSHTKSIYFEGIPKIETFKKC
YKLIYQQQKLDITKNGLAMSQFLQIEPQLLKFILKVFLDLQFITQNDGIIKINTTAPKQD
ITSSRVYQGRLHRIDVEKQLLYADFPSLQQWMENEMHEEE
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgattcaatcaaaatataaatgggttagtaaaacaaacgacaacgttatctctgaagaa
acgcttaaatcttttaacattactccgttaatgaagtgtattttagaacacaaaggtata
acaacctatgaagatgtacatacattgttgcatacggatactatagttcatgatacggca
ctgctcagtgatattgagcgtgcaactgaacgtatacaaagcgcaattaaatcaaaagaa
ccgattttagtttatggagattatgatgccgatggcgtgacatcgacatcaatattagtg
catacgttagaacaattgggtgcaattgttgggtggtatatccctaaccgtttttcagaa
ggttatggtccgagcgatgtcgcatttaaaaatgcctatgatgaaggtgtgaaattaatc
atcacggtagataatgggattcaaggtcatgaagagatagatatggtacaaaagctaggt
gtagatgtgattgtaacggatcatcatgaaattggagagacattacccaatgcatatgct
attgttcatcccatgcatccggattatgattatccgtttccttatttatgtggtgcaggg
gtagctttaaagctggcgcaacatttattaaatgaactgcctgattatttttgggtgtat
gcgatgatagggacaattgcagatttagtaccaatgcatgacgaaaatagaagtattgta
cgtaaagggctcaagttaatgaataaagaaacgccaactgcgttaaaagcaatattaaat
gaggcaaagtatgatgatgtaattaatgaagaaacgattggatttacgattgggcctagg
ctaaatgctgtaggccgtttagatgatgcaagtttagctgcggagttattgatgacagat
gacattgacgaagcacaatttttggctgaacaagttgaacattttaatcaagaacgtaag
gatattgtaaaaactataactgaagaagctatgacgatagctaaatctcaagttgaagaa
ggtcaacgatttttagtattataccaagaaaattggcatgaaggtatcttaggtatcgtt
gcttctcgaatcgttgaagcgtatcaacgtccaaccatgattcttaatatagactatgaa
aaacaatatgcaaaaggctctgcgcgtagtatcgctcaaatttcaatgtttgaattatta
tcatctcaatcccatttgattgataaattcggtggtcatcatgcggcggctggtttaaca
ctaccgattgataatgttgaacttctaaaacaagcacttaatgctgaaatgtcaatgaaa
tattctgaggatgcactgcaaccagagaaaatgattgatgccacaatagcactagatgag
gttacggtagagaatattgcttcacttgaacggttacgtccatttggtatgcagtttgag
cgcccagtgtttcgcttaaataacttaacgattcaacaagctaaagctatagggcaacaa
caaaatcacttaaagatgtcttttgtagaacaaaagcttcaagggttgttttggaacgaa
ggttcccgtattcatgaattaatgcctaatcaacacataaacgctatcggtgaattgcaa
atcaatgaatggaatggtaatcgcacaccacaattaattgttgcagatattaatagtaat
ggtcgccaaatttttgattaccggagtaaaaataagaaattgccccaatttgaagtagct
tcaaacacatgttacttgatacatcctaatagtgataaattaagtgaacatgaatactat
tatggtgaacctatccctaatgcgtacgataaatgtgtgtttcgcgaattgccgctcaca
ttagatgattttaaagagacgttacatgtcattcaatcgtcacaactatacgtgcaattt
tcacatacaaaatcgatttattttgaagggatccctaagattgagacttttaaaaaatgt
tataagctcatttatcaacaacaaaaacttgatattactaaaaatggactagctatgagt
caatttttacaaattgaaccacaactattaaaatttatattaaaagtctttcttgattta
caatttatcacacaaaatgatggtataataaaaattaatacaactgcgcctaaacaagac
atcacatctagccgtgtttatcaaggacgattacatcgaatagatgttgaaaagcagtta
ttatatgctgattttccttcattacaacaatggatggaaaatgagatgcatgaggaagaa
tga
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