Staphylococcus hyicus: SHYC_08020
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Entry
SHYC_08020 CDS
T03578
Symbol
pnp-2
Name
(GenBank) polyribonucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shu
Staphylococcus hyicus
Pathway
shu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHYC_08020 (pnp-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shu03019
]
SHYC_08020 (pnp-2)
03016 Transfer RNA biogenesis [BR:
shu03016
]
SHYC_08020 (pnp-2)
Enzymes [BR:
shu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SHYC_08020 (pnp-2)
Messenger RNA biogenesis [BR:
shu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SHYC_08020 (pnp-2)
Transfer RNA biogenesis [BR:
shu03016
]
Prokaryotic type
tRNA degradation factors
SHYC_08020 (pnp-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_2
KH-I_KHDC4-BBP
KH_2
MvcA_ins
SPATA25
KH_PNO1_2nd
CdiI_2
DUF3016
Spt6_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AJC96342
LinkDB
All DBs
Position
complement(1643423..1645525)
Genome browser
AA seq
700 aa
AA seq
DB search
MSQEKKVFKTEWANRPLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLT
VNYEEKMYAAGKIPGGFKKREGRPADEATLTARLIDRPIRPLFPDGYRHDVQIMNMVLSA
DPNCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGEFVINPNLEQQATSRLDLEVA
GHKDAINMVEAGASEITEAEMLEAILFGHKEIQRLCAFQEEIIAHIQPEKHDFVPQEKNE
TLIDSVKAKAEAHQLYQAIQTVDKQEREANLDAAKETIIAEYINEEDPENEALIQEVNQI
INALIKEEVRRLIADEKVRPDGRKPDEIRPLSSEVGLLPRAHGSGLFTRGQTQALSVLTL
GSISEYQIIDGLGEEEHKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALKYIIP
DEKTFPYTVRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDESYT
ILTDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTKEVIEEALEQARQGRLAILDH
MLQTIEQPRPELSAYAPKVEILTIKPEKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVY
IGSTEQEMINQARSWIESIVREAEVGQIYEGKVKRIEKFGAFVELFPGKDALVHISQIAN
ERINKVEDVLKIGDTLQVKVTEIDKQGRVNASHKVLLNSK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaaaaaaaggtatttaaaacggagtgggccaatcgaccgttaacaattgaa
acaggtcaactcgcgaaacaagcgaacggtgctgtccttgttcgttatggagatacagta
gttttatcgacggcaacagcctctaaggagccacgcgatggtgatttcttcccattaaca
gtaaactatgaagaaaaaatgtatgctgctggtaaaattccaggtggctttaaaaaacgt
gaaggacgaccagctgatgaagcaacgttaacagcgcgtttaattgaccgtccaatccgt
ccacttttcccagacgggtatcgccatgatgttcaaattatgaatatggtgttaagtgca
gacccaaattgttcaccggaaatggcagcaatgataggatcatctatggcactcagtgtc
tctgatattccattccaaggccctattgcaggtgttaatgtaggttatgtagatggggag
tttgtgattaaccctaatttagaacagcaagcaacatcacgtttggatttagaagttgct
ggacataaagatgcgattaacatggtagaagcgggagcaagtgaaatcactgaagcagaa
atgttagaagcgattttatttggacacaaagaaattcaacgtttatgtgctttccaagaa
gaaatcattgcgcatattcaacctgaaaaacatgactttgtgccgcaagaaaaaaatgaa
acattaattgattctgttaaagctaaagctgaagcacatcaactttatcaagcaattcaa
actgttgataagcaagaacgtgaagcaaacttagatgctgcaaaagaaacaattatagct
gaatatattaacgaagaagatcctgaaaatgaggctttaatccaagaagtcaaccaaatt
attaatgcgttaattaaagaagaagtacgtcgtctgattgcggatgagaaagtgagacct
gacggacgtaaaccagatgaaattcgaccattatcttcagaagttggattgttgccacgt
gcccatggttcaggcttatttacacgaggtcaaacgcaagcattatctgtgttaacgctt
ggttcgatttctgagtaccaaattattgatggtttaggtgaagaagaacacaaacgattt
atgcaccattacaatttcccgaacttctcagtaggtgaaacagggccagttcgtgcacct
ggtcgtcgcgaaattggtcatggcgctttaggggaacgcgcattaaaatatatcattcca
gatgaaaaaacattcccttacactgtacgtatcgtaagtgaagttttagaatcaaatggt
tcatcatctcaggcatctatctgtggttcaacacttgcgttaatggatgcgggtgtacca
attaaagcgcctgtagcaggaattgcaatggggcttgtcacacgtgatgaaagttatacc
attttaactgatattcaaggtatggaagatgcgttaggtgatatggactttaaggtggca
ggtacaaaagaaggaatcactgcgattcaaatggacattaaaatagatggtttaacgaaa
gaagtcattgaagaagcccttgaacaagcacgtcaaggtcgtttagcaattttagaccac
atgcttcaaacgattgagcaaccacgtccagaattaagtgcttatgcacctaaggtagaa
atattaacaattaaaccagaaaaaattagagatgtcataggtcctggcggtaaacaaatt
aatgaaattattgatgcaacgggcgttaagttagacattgaacaagatggtacggtttat
attggttcaacagaacaagagatgattaatcaggcgcgttcatggattgaaagtattgta
cgtgaagctgaagtgggtcaaatctacgaaggtaaagttaaacgcattgaaaaatttggc
gcattcgttgagttattcccaggtaaagatgcgttagttcatatttcacaaattgcaaat
gaacgcattaataaagtagaagatgtattgaaaattggagatacacttcaagtcaaagtt
actgaaattgataaacaaggtcgtgtcaatgcatcacacaaagttttattaaactcgaaa
taa
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