Shouchella hunanensis: PQ477_00380
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Entry
PQ477_00380 CDS
T09126
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shua
Shouchella hunanensis
Pathway
shua03420
Nucleotide excision repair
shua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PQ477_00380 (helD)
03430 Mismatch repair
PQ477_00380 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shua03400
]
PQ477_00380 (helD)
Enzymes [BR:
shua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQ477_00380 (helD)
DNA repair and recombination proteins [BR:
shua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ477_00380 (helD)
MMR (mismatch excision repair)
Other MMR factors
PQ477_00380 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
UvrD_C
Viral_helicase1
PhoH
AAA_30
DEAD
SLFN-g3_helicase
nSTAND3
ResIII
AAA_16
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
WDF03974
LinkDB
All DBs
Position
complement(65764..68067)
Genome browser
AA seq
767 aa
AA seq
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MQYEYERAAFIHAFIRTKQTLLKQQLEGVHEDEKEIKETFWDNVTMNFSNTEDAEETISS
IRQQAELLHERERSSDVMKKQMKTLRRLANAPYFGRIDLKEEGQKQEDPIYIGLASLMNE
SEEEFLIYDWRAPISSVYYDAEIGPVSYNAPAGKIEADLVGKRQYVFRRGQLKAMFDTSL
AIGDERLKDALSDQASTSMKTIVSTIQKEQNKAIRNEKNRFLIVQGVAGSGKTSVAMQRA
AYLLFRHREQLDAQQLILFSPNELFSNYVSTVLPELGEENMTQQTLKGYLYKRLGKKFEV
ENHFEQLEFMLSNETTERYRTRKRSIELKSSPLFKHYLDDYLAELEIDGVLFKDLRFKGS
TIVKKTDIQTYFYCLDHSITLQNRLKLTAEWLLKELAKQEGKERSSDWVEQERELADKET
LMQTYHQVDGKQLNSDTFDLEEQQEKLLAKRIAKAAFKPLQRLVRSFSFLDSDAMYEQFL
LSDRHKKIDGFSEVALFTVHELGEGRMPYEDATPYLYLLDQLKGLQVDRSIKHVFIDEAQ
DYSSFQLMYLQMLYPRARFTIVGDYSQSLNHQFGTAAELLAGIGLPKESTYIEFKKSYRS
TKPIMSFSRELLPEPKKVEPFDRDGKQPTIVQAANQVTVIKPMVEFIESSQDEGYQTIAI
LTKTAEEAKKAHATLSEWLTIQLVTEDHHEYDTGIVVLPIYLAKGIEFDSVLVFNASDQQ
FHTEQERFHLYTACTRAMHELALFSVGAPSRFLQEIDESAYKKQTLS
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
ttgcaatatgaatatgaacgtgcggcatttattcatgcctttattcgtacaaaacaaacg
ctattaaagcaacagcttgaaggtgtgcacgaagatgaaaaagaaataaaagaaaccttt
tgggataatgtaacaatgaatttttccaatacggaggatgctgaagaaacaatctctagt
atccgtcagcaagcagagcttttacatgagcgagagcgtagcagcgatgttatgaaaaag
caaatgaagacgctacgtagactcgctaacgccccttatttcggacggattgatttaaaa
gaagaaggacagaagcaagaagatcctatttatattgggttagcctcattaatgaacgag
tcggaagaagagtttcttatctatgattggcgagcgccaatttcaagtgtgtattatgac
gcagagattggaccagtttcctacaatgcgcctgctggtaagatagaggctgacttagtt
gggaagcggcaatatgtgtttcgcagaggtcagctgaaagcgatgtttgatacctctctt
gcgattggagatgaacgattaaaggatgcgctaagtgatcaagcgtccacttccatgaaa
accattgtatctaccattcaaaaagagcagaataaagcgatacgaaatgaaaaaaaccgc
tttttaattgtgcaaggagtagctggtagcggtaaaacgtctgttgcaatgcagcgagcc
gcctatctattatttcgacaccgagagcagctggatgcgcagcagttgatattgttttct
ccaaatgagttgttttcaaactatgtttcgactgtgcttccggaattaggtgaagaaaat
atgactcagcaaactttaaaaggttacttatataaacggttagggaaaaaatttgaagtc
gagaatcattttgaacagttggagtttatgctctcaaatgagacaacagagcgttatcgt
acacggaaacgtagtattgaattaaaatcgagccctttattcaaacactatttggacgat
tatttggctgaacttgaaattgacggtgttttgtttaaagacctacgctttaaaggcagt
acgattgtgaaaaaaacagatattcaaacgtacttttactgcttagatcattccattacg
cttcaaaaccgcttaaaacttacggctgagtggctgttaaaggagcttgctaagcaagaa
ggtaaagagcgctccagtgattgggtggaacaagaacgagagcttgccgataaagagaca
ttaatgcagacttaccatcaagtagacgggaagcaattaaatagcgatacatttgatctt
gaagagcaacaagaaaaattgctggcaaaacggattgctaaagcagcatttaagccatta
cagcgacttgtgcggtcgttttcgtttttagatagtgatgcaatgtacgaacaatttcta
ctttcggatcgtcataagaagattgatgggttttcagaagtagctttgtttaccgtccac
gagcttggcgaaggacgaatgccctatgaagacgccacaccttatttatacttgttggat
caattaaaagggttgcaagtagaccgatcaattaaacatgtgtttattgatgaagctcaa
gattattcgtcatttcaattaatgtatttgcagatgttatatccgcgtgcccgttttaca
atcgttggggattattcgcaatccttaaaccatcagttcggtacggctgcagaattatta
gctggaataggtcttcctaaagaatccacgtacattgaatttaaaaagagttatcgatcg
acaaaaccgattatgtcgtttagccgtgaactattgccagagccgaagaaagtggagccg
tttgatcgagacggaaaacagccgaccattgttcaggcggccaatcaagtaaccgtcatt
aagcctatggtagagttcattgaatcgtcacaagacgaagggtatcaaaccattgcaatc
ttaacaaaaacagctgaagaagcgaaaaaagcccatgcgacgttaagtgaatggctaacg
attcagcttgttacagaggatcatcatgaatacgatacggggattgtagtgctaccaatt
tatttagcaaaaggaatagaatttgattccgttcttgtttttaatgcgtcggaccagcag
tttcatacggagcaagaacggtttcatttgtacacagcatgtacacgagcgatgcatgag
cttgcgctgttctctgtaggagcgccgtctcgtttcttgcaggaaattgatgagtctgcc
tacaaaaaacaaacgctatcctaa
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