Shouchella hunanensis: PQ477_16340
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Entry
PQ477_16340 CDS
T09126
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
shua
Shouchella hunanensis
Brite
KEGG Orthology (KO) [BR:
shua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shua03019
]
PQ477_16340
03009 Ribosome biogenesis [BR:
shua03009
]
PQ477_16340
Enzymes [BR:
shua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQ477_16340
Messenger RNA biogenesis [BR:
shua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ477_16340
Ribosome biogenesis [BR:
shua03009
]
Prokaryotic type
rRNA helicases
PQ477_16340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
PhoH
MipZ
Motif
Other DBs
NCBI-ProteinID:
WDF03052
LinkDB
All DBs
Position
3176919..3178277
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AA seq
452 aa
AA seq
DB search
MNAENFSRLGITNKLQQALVDANISKPTEIQERLIPAILNKKDVIGQSQTGTGKTFAFLL
PLIEQITVTEAHVQAIVTAPTRELANQLYNEVMKLIKPFEGEIQAQLYVGGTDRQKQMDR
LQSKQPHLVVGTPGRINDLIQQNALLAHTATTLVVDEADQMLDMGFIEDVDKVAGKMAEE
LQMLVFSATIPEKLQPFLRKYMSQPRHVHVQPEVLAAKAVKHQLVPVRHKDKMTVLKDVV
KHINPYLAIIFVNTKEQADIVADELAKESLNVERLHGGLASRERRKVMKKVDDASVQFLV
ASDLAARGMDIKGVTHVINYEFPADLDFYVHRVGRTARAGADGIALSLFEKTDEYACGKL
SSKGITFTFVEFKDGEWQQVKGPIGSGGFSQKKPQSGEKKKADTTAAKPQERTGGKAKAK
PKKVKPAYKRKARVAQEKRNKRDNKLRSRKSK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagaaaatttttcacgtctcggaataacgaataaattacaacaagcacttgtt
gatgccaacatatcaaaaccaacggaaatacaagaacggttaattccggcaatcttaaac
aaaaaagatgttattggccaatcacaaacaggtacaggaaaaacgtttgcttttttgtta
ccacttattgaacaaataacggtaacggaagcgcatgtacaagctattgtgacagcacca
acaagagaacttgcgaaccagctttataatgaagtaatgaagctaataaagccgtttgaa
ggggaaatccaagcgcagttgtatgtaggtggtacagatcgtcaaaagcagatggatcgt
ttgcagtcaaaacaaccacatcttgttgtcggaacaccagggagaattaatgatttaata
cagcaaaatgcgctactagcacatactgccaccactcttgttgtagatgaagcagatcaa
atgcttgatatggggtttattgaggatgtagataaagtagctggtaaaatggcagaagag
ctacaaatgctcgttttttcagcaacaattcctgagaaactacagccatttttacgaaaa
tatatgtctcaaccacgtcacgttcatgtacagcctgaggtattagccgcaaaagcagta
aagcatcagcttgttccagtgcgacataaagataaaatgactgttcttaaagatgttgtc
aagcacattaatccatatttagcgattatttttgtgaatacaaaagagcaagcagatatt
gtagcggatgaattagcgaaagaatctttaaatgttgaacgtttgcatggaggtcttgca
tcaagagaacgacgtaaggtaatgaaaaaggttgatgatgcaagtgttcaattcctcgta
gcgtctgatttagctgctcgtggaatggatatcaaaggtgtcactcatgtcattaactac
gaatttccggctgatttagacttttacgttcatcgtgttgggcgtacagctagagctggt
gcagatggtatagcattatcgctgtttgagaaaaccgatgaatatgcgtgtggtaagcta
tcgagcaaaggcattacatttacatttgttgagtttaaagacggagaatggcaacaagta
aaagggcctattggtagcggaggcttttcacaaaagaaaccccagtctggtgaaaagaaa
aaagcagatacaacagcagcaaagccacaagagcgaacaggtggaaaagctaaagcaaaa
ccaaagaaggtcaagcctgcttataaaagaaaagcacgcgttgcacaagagaaacgcaat
aaacgagataacaaattacgttcccgtaaaagtaagtaa
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