Shouchella hunanensis: PQ477_19810
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Entry
PQ477_19810 CDS
T09126
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
shua
Shouchella hunanensis
Pathway
shua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ477_19810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shua03019
]
PQ477_19810
03009 Ribosome biogenesis [BR:
shua03009
]
PQ477_19810
Enzymes [BR:
shua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQ477_19810
Messenger RNA biogenesis [BR:
shua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQ477_19810
Ribosome biogenesis [BR:
shua03009
]
Prokaryotic type
rRNA helicases
PQ477_19810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WDF03708
LinkDB
All DBs
Position
complement(3863501..3865117)
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AA seq
538 aa
AA seq
DB search
MTFFSDFEISDQVKQAIKEMGFEEPSPIQEKAIPAILTGGDVIGQAQTGTGKTAAFGIPV
VDKVTSDRAIQALILTPTRELAIQVAGELQKLSMHKAIRTLPIYGGQSIGHQIKALKQGV
QIVIGTPGRMLDHLRRGTLKLQSVHTVVLDEADEMLDMGFVEDIEAILKEVNDVRQTLLF
SATMPPAIRKLSRNYMNNPATVTINKGEVTAPSINQVYYKVLERNKIDSLCRIIDSDDVD
LGILFCRTKKGVAELTEALQARGYLADGLHGDLTQSQRDVVMKKFRDSSIEFLIATDVAA
RGIDVENVSHVINFDIPQDPESYVHRIGRTGRAGRTGAAITLVTPREMKHLRSIEKEIKM
YIPSQEVPTIEDVVEKQQTSWKNLIKETIESGGKEMELFRPLADQMLEEEVDAKEIISAL
LKLKFSTETASEDAGYSFGETGGAKGMVRFFINVGRNVNLTPKILGEEISRLIGIPVKTI
GRIDIFDNFSFVDVPEESAPFAYEGLRYSRINGARVNLEPAKPRPKRERRPHAAGRRS
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgacatttttttcagacttcgagatttcagaccaagtaaaacaagcaattaaggagatg
gggtttgaagagccatctcctatccaagaaaaagccatcccggctattcttaccggaggc
gacgtcattggccaggctcaaacaggaactggtaaaacagcggcttttggtattcctgtt
gtggacaaagtgacaagtgatcgagcgattcaagcacttattttaacaccgacacgtgag
cttgctattcaagtagctggtgaactacaaaaattgtctatgcacaaagcaattcgcacg
ctaccgatttatggtgggcagtcaataggtcatcaaattaaagcgttaaaacaaggtgta
caaattgtgatcggtacaccaggtcgaatgcttgatcacttgcgtcgtggcacattaaag
cttcaatcggttcatacagtcgtgcttgatgaagcggatgaaatgcttgacatggggttt
gttgaagacattgaagcgattttaaaagaagtgaatgatgtaaggcaaacgcttcttttc
tcagcaacaatgccaccagcaattcgtaagctatcacgaaattatatgaacaatcctgct
actgtaacgattaataaaggagaagtaaccgccccttctatcaatcaagtgtattataaa
gtgctggagcgtaataaaatcgattccctttgtcgaatcattgacagcgatgatgttgat
cttggtattttattctgccgtacaaaaaaaggggtcgccgaattaacagaagcacttcag
gcaagaggttatttagcagacggtttacatggagatcttacacagtctcagcgtgatgtt
gtgatgaaaaaattccgcgattcttctattgaatttttaatcgcaacagatgtagcagct
cgcggaattgatgtagaaaatgtgagtcacgttattaacttcgatattccacaagatcca
gagagttatgttcaccgcattggtcgtacaggtcgtgcaggccggacgggtgcagcaatt
acgcttgtgacgccaagggaaatgaagcacttacgttcaattgaaaaagaaataaaaatg
tacatcccgtctcaagaagtaccaaccattgaagatgtggttgaaaaacaacaaacatca
tggaaaaatttgattaaagaaacaatcgaatcaggtgggaaagagatggaattattccgt
ccgctcgctgatcaaatgttagaagaagaagtcgacgcaaaagaaatcatttctgcatta
ctaaaactgaaattctcgaccgaaacagcaagtgaggatgcgggctatagctttggtgaa
acaggtggagcaaaaggaatggttcgtttctttattaacgtcggccgtaacgtcaattta
acaccgaaaattcttggtgaggaaattagtcgcttaattggtattccagtgaaaacgatt
ggacgtattgatatctttgataacttctcgttcgtcgatgtacctgaagagagcgcacca
tttgcatatgaaggtctgcgctattcgagaatcaacggtgctagagtgaatttagagccg
gcgaagcctcgtcctaagcgtgagcgtcgtcctcatgctgcaggtcgccgttcataa
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