Shouchella hunanensis: PQ477_19970
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Entry
PQ477_19970 CDS
T09126
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
shua
Shouchella hunanensis
Pathway
shua03030
DNA replication
shua03430
Mismatch repair
shua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ477_19970
03430 Mismatch repair
PQ477_19970
03440 Homologous recombination
PQ477_19970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shua03032
]
PQ477_19970
03400 DNA repair and recombination proteins [BR:
shua03400
]
PQ477_19970
Enzymes [BR:
shua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQ477_19970
DNA replication proteins [BR:
shua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQ477_19970
DNA repair and recombination proteins [BR:
shua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQ477_19970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
DNA_pol_A_exo1
RNase_H_2
DEDDh_C
POT1
Zn-ribbon_8
DUF1409
Motif
Other DBs
NCBI-ProteinID:
WDF05978
LinkDB
All DBs
Position
complement(3895818..3900098)
Genome browser
AA seq
1426 aa
AA seq
DB search
MGSREERLRLLLEQLQVPTDGHTYFENGYIKKLAITRETKSWHFYIHLQTVLPADLAQLF
RSKLEVTFKEIAKATCTFTYDHNEMTVDAWNNYWPIIMSEFSLLSPPLASALQKQTPDMS
KGTLALVAQNDAEGQAMKRKLVEPFKQICTRYGLPTIPLHISVEESKEAYDEFVRKRQEE
DHSKVVEAMLEKKRQEEEMTKQVSAANLSMGYPIKDDPIPLEAIVDEERRITVQGYVFAA
ETRELRSGRTLLTFKITDYTDSILVKMFSRDKEDIPILQAVKKGMWMKVRGGIQNDTFVR
DLVMIANDFNQITPKSRIDTAEEKRVELHTHSTMSQMDGMASVGQYVEQAAKWGHSAVAI
TDHGVVQAFPEAYNASKKHGIKVIFGMEANIVDDGVPIAYNSDHRKLLDEEYVVFDVETT
GLSAVYNTVIELAAVKIKNGEIVDTFESFADPKEPLSSTIIDLTGITDDMLQGAPDPLDV
LKQFKEFAGNGTIVAHNASFDIGFLNVGYKKMGFTEVKNPVIDTLELGRFLYPELKNHRL
NTLCKKFDIELVSHHRAIYDTQATAYLLWKMVKDAAEKEIMFHDELNNHMGQGNFHRQRP
FHATIHVTSQEGLKNLYRLVTMSHVNYYFRTPRIPRSELSKHREGLFIGSACDKGEVFEG
MMQKSADEVENIARFYDFLEIQPPGNYRHLIERELIKDEQALQEIIGKIISLGEQLNIPV
VATGNVHYVNENDAIYRKILIASQGGANPLNRQALPLVHFRTTDEMMAEFAFLGEEKAHD
LVVTNSNRIANEVGEVHPIPDELYAPKIEGADDEMREMSYGRARAIYGNPLPEIVEARLE
KELNSIIGHGFAVIYLISQKLVKKSLDDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYV
CPNCQHSHFFDDGSVASGYDLPDANCPECGSAYQKDGQDIPFETFLGFKGDKVPDIDLNF
SGEYQPRAHAYTKDLFGEEYVYRAGTIGTVAEKTAYGFVKGYQGDHDLLMRGAEIDRLVS
GCTGVKRTTGQHPGGIIVVPDYKDIHDFSPIQYPADDKNSEWKTTHFDFHSIHDNLLKLD
ILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKIFASPDILGVTEEQIMCKTGTLGIPEF
GTRFVRQMLEETKPSTFSELLQISGLSHGTDVWLGNANELIYNGTCELKDVIGCRDDIMV
YLIYKGLESSLAFKIMEFVRKGKGLQPEWVEEMKKHDVPDWYIDSCTKIKYMFPKAHAAA
YVLMAVRIAYFKVHHPILYYATYFTVRADDFEMDVMIKGSSSIRAKIDEINAKGLDAAPK
EKAVLTVLELSLEMCERGFGFQKVDLYKSSATEFIVDGDTLLPPFNSLNGVGTNAALNIV
KARENGHFLSKEDLQQRAKLTKTVVENLSDHGCLHDLPESNQLSLF
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgggatcaagagaagaacgccttcgtttattactcgaacaattacaagtcccgacagat
ggacatacctatttcgaaaacggctatataaaaaaattggcgatcacgcgagagacgaaa
tcgtggcatttttatattcatttgcaaacggtacttccagctgatttagctcaactgttt
agatcgaaattagaagtaacgtttaaagaaattgctaaagcaacttgtacatttacgtac
gatcataacgagatgacagtagacgcttggaacaactactggccaatcattatgagtgag
ttttcgctattgtcaccacctcttgcatctgcactacaaaagcaaacgccagatatgagc
aaaggcacactggcacttgttgcacaaaatgatgcagagggtcaagcaatgaagcggaag
ctcgttgaaccgttcaaacaaatttgtactcgttatggtttgccgacgattccattgcac
atatcggtggaagaatcaaaagaagcgtatgatgaatttgtacgaaagcgccaagaagaa
gatcattctaaagtcgtggaagcaatgcttgagaaaaaacgtcaagaggaagagatgacg
aaacaagtttcggctgcgaatttatcaatgggctatccaattaaagatgaccctattcct
cttgaagcgattgtggatgaagagcgaagaattacggttcaaggatatgtgtttgctgca
gagacccgagagctaagaagtggtcgaacgctgttaacgtttaaaattacagattacacc
gattcgatattagtaaaaatgttttcacgtgataaagaagatattccgattttacaagca
gtgaaaaaaggcatgtggatgaaggtccgtggaggtatccaaaacgatacattcgttcgc
gatcttgtgatgattgcgaatgattttaatcaaataacgcctaaatctcgtattgataca
gcagaagaaaagcgagtcgaactgcatactcattcaacgatgagccaaatggatggaatg
gcatcggttggtcaatatgtggaacaagcagcgaaatggggacatagtgcggtagcgatt
acggatcatggtgttgtacaagcctttcctgaagcctataacgctagtaaaaagcacgga
ataaaagttatttttggaatggaagccaatattgttgatgacggcgtacctattgcctac
aattcagatcatcgtaagctattggatgaagaatatgttgtattcgacgtagagacaaca
ggtttgtctgctgtatacaatacggttattgagctggcggcagtcaaaattaaaaatgga
gaaattgttgatacatttgaatcgtttgctgaccctaaagagccactatcgtcaacgatc
attgacttaacagggataactgatgacatgcttcaaggcgctcctgacccgttagacgta
ctcaagcaattcaaagaatttgcaggaaacggaacgattgttgcccataatgcgagcttt
gatatcggcttcttaaatgtgggatataagaagatgggctttacagaagtgaaaaatcca
gtcattgatacattggaactgggtcgttttctttaccctgaattaaaaaatcatcggtta
aatacattatgtaagaaattcgatattgaattagtcagccatcaccgagctatatacgat
actcaagcaacagcctatttattatggaaaatggtaaaagatgcagcggaaaaagagatt
atgtttcatgatgaactgaataatcatatggggcaaggcaattttcatcgacagcgccct
tttcacgcaaccattcatgtaacgtctcaagaaggattaaaaaatctttaccgacttgtc
acgatgtctcacgtcaattattatttccgtacaccaagaattccgcgttctgaattaagc
aagcatcgagaaggtttgtttatcggatcagcatgtgataaaggcgaagtatttgaagga
atgatgcagaaatcagccgacgaagttgaaaacatcgcacgattctatgatttcctagag
attcaaccaccgggtaattaccgccaccttattgaacgagaactgattaaagatgaacag
gctcttcaagaaattatcggtaaaattatttcgttgggagaacagctcaacatacctgtt
gtagcaacgggcaacgttcattacgttaacgaaaatgacgcaatctatcgtaaaatttta
attgcttctcaaggtggagcgaacccattaaatcgtcaagcacttccacttgttcatttc
cggacaacagatgaaatgatggctgagtttgcatttcttggagaagaaaaagctcacgac
ctcgttgtgacaaattcgaatcgtattgcaaacgaagttggagaggttcaccctattccg
gacgaattatacgcaccaaaaattgaaggtgcagatgatgaaatgcgcgaaatgagctat
ggaagagcaagagctatatacggaaatccgcttcctgaaattgttgaggcacgactagaa
aaagaacttaacagtattattggacacggcttcgcagttatttatttaatttcacagaag
cttgttaaaaaatcacttgatgatggctatctggtaggttcccgtggttccgttggttct
tcatttgtcgcaaccatgacggaaattactgaagtcaaccctctaccgccacactatgtt
tgcccgaactgccagcactcgcattttttcgatgatggttctgttgcgtctgggtatgat
ttgccagatgcaaactgtcctgaatgcggatcggcttatcaaaaagatggtcaagatatc
ccgtttgaaacgtttctaggcttcaaaggagataaagtacccgatattgatttgaacttt
tctggtgagtatcagccgagagcccatgcgtatacgaaagacttgtttggtgaggaatat
gtctatcgagctggaacaatcggtacggttgccgaaaagactgcgtacggttttgtgaaa
ggctatcaaggtgatcacgatttgttaatgagaggagcagaaattgaccggctcgtttca
ggttgtaccggtgttaaacgaacgactggacaacatccaggcggaattatcgttgtgccg
gattataaagacattcacgatttttcacctatacaatatccagcagacgacaaaaactca
gagtggaaaaccactcattttgatttccattcaattcacgacaatcttctgaaactcgat
attcttggacacgatgatccaacggcaattcgaatgcttcaagatttaagtggtattgat
ccaaagacgattccaacggatgacccagacgttatgaaaatatttgcctctccagacatt
ttaggcgtaacagaagagcagattatgtgtaagacgggaactttaggcattcctgaattt
ggaacacgtttcgttcgtcaaatgctcgaagaaacaaagccgagcacattctctgaactt
ctgcaaatttctgggttatcccacggtacggatgtatggcttggtaacgcgaatgaattg
atttataatggtacgtgtgaattgaaagacgttattgggtgtcgtgatgatattatggtc
tatttaatatacaaagggctagagtcgtcattggcatttaaaattatggaatttgttcgt
aaaggaaaaggacttcagcctgaatgggttgaagaaatgaaaaagcatgatgtgccagat
tggtacattgattcctgtacgaaaataaaatatatgttccctaaagcccatgcagcggca
tacgtattaatggccgtacgaattgcatatttcaaagtgcatcatcctatcctttattat
gctacgtattttacggtacgagcagatgattttgagatggacgtgatgataaaaggatca
agttcgattcgtgctaaaatcgatgaaattaatgcaaaaggcttagacgctgcgccaaaa
gagaaagctgtcctaacagtacttgaactttctcttgagatgtgtgaacgcggctttggt
ttccaaaaagtcgatctttataaatcgtcagcaaccgaattcattgtggatggcgatacg
ttacttccgccgtttaattcattaaacggagttggtacaaacgcggcgcttaatattgtg
aaagcaagagaaaatggtcactttttgtcaaaagaggatctacagcaacgagcgaagttg
acaaaaacagttgtcgagaatttatctgatcacggatgtttacacgatcttcctgaatca
aatcagctatcactattttaa
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