Streptomyces huangiella: ABVG11_27895
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Entry
ABVG11_27895 CDS
T11406
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shug Streptomyces huangiella
Pathway
shug03030
DNA replication
shug03430
Mismatch repair
shug03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABVG11_27895 (dnaE)
03430 Mismatch repair
ABVG11_27895 (dnaE)
03440 Homologous recombination
ABVG11_27895 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shug03032
]
ABVG11_27895 (dnaE)
03400 DNA repair and recombination proteins [BR:
shug03400
]
ABVG11_27895 (dnaE)
Enzymes [BR:
shug01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABVG11_27895 (dnaE)
DNA replication proteins [BR:
shug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABVG11_27895 (dnaE)
DNA repair and recombination proteins [BR:
shug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABVG11_27895 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
XUZ89690
LinkDB
All DBs
Position
6348567..6352109
Genome browser
AA seq
1180 aa
AA seq
DB search
MTKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMTDHGNLHGAYDFYQQATGA
GVTPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFRL
SSDAYMEGYFVKWPRMDKETIAQWSEGLIASTGCPSGELQTRLRLGQFDEAVKAAAEYQD
IFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSRESVAHDALLCV
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCRNTLLVAEQIDNTGWFDKRD
LMPRFDVPEGFTEVTWFQEEVRKGMARRFPGGIPEDRQKLVEYEMDVIIQMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPIEHGLIFERFLNPERVSMPDVDI
DFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAMGDRITKAMP
ADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLVRQMGVHAAG
VIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIMDDAVKMVRA
NKGVDLTMLDLTLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDNFEDISAVSALY
RPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITYGLIVYQEQVQKAAQVLAG
YSLGQADLLRRAMGKKKPEVLEKEFVNFQKGARDKGYSDEAIQAVWDVLVPFAGYAFNKA
HSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIKVLTPNVNES
EANFTAQGDDVILFGLTAVRNVGQNVVEAIIRSRKSKGKYSSFPDYLDKVEAVVCNKRTT
ESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGDDSGGDGPGFG
LDIEFSDVEWEKTYLLAQEREMLGLYVSDHPLFGIEHVLNEKADAAIAQLTGGEHSDGAI
VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGR
LDKREDVPRLVAMELMVPDLSEASANAPVTITIPTVKVTPPLVEKLGEVLSHHRGATEVR
IKLQGARKTTVLRLDRHRVTADPALFGDLKVLLGASCLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaagccgcccttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctcaaggacatgttcaacgcgtgcaacgagatgggcatgacccatatcgcc
atgaccgaccacggcaacctgcacggggcgtacgacttctaccagcaggcgacgggcgcc
ggggtcacgccgatcatcggcatcgaggcgtatgtggcgccggagtcccgccgctacaag
cggagggtgcagtggggccagccgcaccagaagcgcgatgatgtctccggttccggtggt
tacacccacaagaccatctgggcggcggacaagaccggtctgcacaatctcttccggctc
tcctccgacgcctatatggagggctatttcgtcaaatggccccggatggacaaggagacc
atcgcccagtggtcggaggggctgatcgcctccaccggctgcccctcgggcgagctccag
acccggctgcggctcggccagttcgacgaggccgtgaaggccgccgccgagtaccaggac
atcttcggcaaggaccgctatttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgggacgggctgctggaggtcggcaagaaactgggcatccccccgctggtcacc
aatgactcgcactacacctactcccgcgagtccgtggcccatgacgcgctgctgtgcgtc
cagaccggcaagaacctctccgaccccgaccgcttccgcttcgacggcaccggctactac
ctgaagtccaccgacgagatgtacgccatcgactcctcggacgcctggcaggagggctgc
cggaacacgctgctggtggccgagcagatcgacaacaccggctggttcgacaagcgcgac
ctgatgccgcggttcgacgtccccgaggggttcaccgaggtcacctggttccaggaggag
gtccgcaaggggatggcccgccgcttccccggcggcatccccgaggaccgccagaagctc
gtcgagtacgagatggacgtcatcatccagatggggttcccggggtacttcctcgtggtc
gccgacttcatcatgtgggcgaagaacaacggcatcgcggtcggccccggccgtggctcc
gcggccggatcgatcgtctcgtacgcgatgggcatcaccgacctcgaccccatcgagcac
gggctgatcttcgagcggttcctcaatcccgagcgcgtctccatgcccgatgtcgacatc
gacttcgacgagcgcaggcgcggtgaggtcatccggtacgtcaccgagaagtacggcgcc
gacaaggtcgcccagatcggcacctacggcaccatcaaggccaagaacgcgatcaaggac
tcggcccgggtgctcggctatccgtacgcgatgggcgaccgcatcaccaaggccatgccc
gccgatgtgctcggcaagggcatcccgctgtccggtatcaccgacgagaagcacccccgc
tacagcgaggcgggcgaagtgcgcgggatgtacgagaacgagccggatgtgaagaaggtc
atcgacaccgcgcgcggtatcgagggcctggtgcgccagatgggcgtgcacgccgcgggc
gtgatcatgtcgagcgagacggtcaccgaccacgtcccggtcttctcgccgaagaacgac
ggccaggtcgtcacccagtgggactaccccacctgtgagtcgctcggcctgctgaagatg
gacttcctcggcctgcggaacctcaccatcatggatgacgccgtgaagatggtgcgggcc
aacaagggtgtcgacctcacgatgctcgatctgaccctggacgaccccaagaccttcgaa
ctgctctgccgcggtgacaccctcggcgtcttccagttcgacggcggccccatgcgctcc
ctgctgcgcatgatgaagcccgacaacttcgaggacatttccgccgtctcggccctgtac
cggccgggtccgatgggcatgaactcgcatatcaactacgcgctgcggaagaacggccag
caggagatcaccccgatccaccccgagctggaggagccgctcaaggaggtcctcgggatc
acctacggcctcatcgtctaccaggagcaggtgcagaaggccgcccaggtgctcgcgggc
tattcgctgggccaggccgacctgctgcgccgggcgatgggcaagaagaagcccgaggtg
ctggagaaggagttcgtcaacttccagaagggcgcccgcgacaaggggtactcggacgag
gccatccaggcggtgtgggacgtgctggtcccgttcgccggatacgcgttcaacaaggcg
cactcctccgcgtacggcctggtcacctactggaccgcctacctcaaggccaactacccg
gccgagtacatggcggcgctgctcacctcggtgcgcgacgacaaggacaagtcggcggtc
tacctcaacgagtgccgccgcatgggcatcaaggtcctcaccccgaatgtgaacgagtcg
gaggccaacttcaccgcgcagggcgatgatgtgatcctcttcggtctcaccgccgtgcgg
aacgtcggccagaacgtggtggaagcgatcatccgcagccgtaagtccaaggggaagtac
agctccttccccgactacctggacaaggtcgaggcggtcgtctgcaacaagcgcaccacc
gaatcgctgatcaaggcgggcgccttcgacgagatgggccacacccgcaaggggctcacc
gcccactacgagacgatgatcgacaacgtggtggcggtgaagcgcaaggaggccgaggga
cagttcgacctcttcggcgggatgggcgacgacagcggtggcgacggcccgggcttcggt
ctggacatcgagttctccgacgtcgaatgggagaagacctatctgctcgcccaggagcgg
gagatgctcggcctctatgtctccgaccatccgctcttcggtatcgagcacgtcctgaac
gagaaggcggacgccgccatcgcccagctcaccggcggtgagcacagcgacggcgcgatc
gtcaccatcggcggcatcatctccggcctccagcgcaagatgaccaaacagggcaacgcc
tgggccatcgccaccgtcgaggacctggccggttccatcgagtgcatgttcttcccggcc
acctaccagctcgtctccacccagctggtcgaggacgcggtggtcttcgtcaagggccgt
ctcgacaagcgcgaggacgtgccccggctggtcgcgatggagctgatggtccccgatctg
tccgaggcgtcggccaacgccccggtgacgatcaccatccccacggtcaaggtcaccccg
ccgctggtggagaagctgggcgaggtgctcagccaccaccgcggtgccaccgaggtgcgg
atcaagctccaaggggcccgcaagaccacggtgctgaggctcgaccggcaccgggtcacc
gccgacccggccctgttcggcgatctcaaggtgctgctgggggcgtcctgtctggccgga
tga
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